Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00160 ATGATAGAACCATTTTTGCTCCTTAAAAAACATACCCATTCCTCACCACACCATCCAACAACAACAACAACAACCACCTTCTCAATGGCCGCGGACATGTCCAACACCAACAATAACAACAACAACAACAACAACAACCCTTCTCACGCCAAGGACTTCTTCGCTTCCCCAGCTCTCTCCCTTAGCCTTGCTGGCATATTTCGGCATGCTGGCGTGGCGGCGGCGGAGGGCGAGGCTGCAACCTCCAACATGGAAGTGGAGGACGGCGATGAAGGCAGCGGCGGAGGAGGAGGCGTCGGGCACACGGTGGATATTAGCAGCGAGAACTCCGGCCCCACTAGATCGAGATCAGAGGATGACTACTTTGAAGGAGAAGGTGAGCATGAAGATGAAGATATTATCGGTGATGATAACAATAACAATAACAACAACAAGAACAAGAACAAGAAGAAGAGGAAGAAATATCACAGGCACACCGCTGAGCAGATCAGAGAAATGGAAGCGCTATTCAAAGAGTCGCCACATCCTGATGAAAAGCAGAGGCAACAACTTAGCAAGCAGCTAGGCCTTGCTCCAAGACAAGTCAAGTTTTGGTTCCAAAATCGCAGAACCCAAATCAAGGCAATACAAGAGCGACATGAAAACTCATTGTTGAAGACGGAAATAGAGAAACTAAAGGAGAAAAACAAAGGGTTGAGAGAGACCATAAACAAAGCTTGTTGCCCCAACTGTGGTGTTGCAACCACTAGTACCAGAGACGGTGCCATTCCAACTGAAGAACAACAGCTTCGCATTGAGAATGCCAAACTCAAAGCTGAGATAGAGAAGCTTCGAGGAGCTTTAGGAAAATACGGAGGATCAGGTGGTGGATCAACATCTCCTTCATGTTCTTCTGGTGCTGCTGGTGGACATGAGCAAGAGAATAGAAGCTCGTTGGACTTTTACACTGGCATCTTCGGAGTTGACAAGTCAAGGATAATGGATACAGTGAACAAGGCTATGGAGGAGCTCATAACCATGGCAACAATGGGGGAACCCTTGTGGCTTCGTAGTGTTGAGACTGGCCGCGAGATACTCAACTACGATGAGTACATCAAACACTTCTCATCCCTTCAAAATTCTTCATCAAACAACACTAACACTCCTTCATCATCAAAGAGATCCATTATTGAAGCTTCAAGAGACACTGCCCTTGTCTTTGTTGATCTCCCACGCCTTCTCCAAACTTTCTTAGATGCGAATCAGTGGAAGGAAATGTTTCCATGTTTAATATCTAAGGCGGCGACTGTGGATGTTATATGCAATGGAGAAGGTTCTAACAGGAATGGTGCAGTGCAACTGATGTTTGCTGAGGTGCAAATGCTAACACCAATGGTGCCCACAAGAGAAGTATATTTTGTCCGCTACTCAAAGCAGTTGAGTTCTGAACAATGGGCTATCATTGATGTATCCATTGACAAAGTAGAAGACAACATTGATGCCTCTCTCGTGAAATGTAGAAAACGCCCGTCAGGTTGCATTATTGAGGACAAGTCAAATGGTCATTGCAAGGTGACATGGGTGGAGCACTTGGAATGCCAAAAGAGTCCAGTGCATACAATGTATAGGACTATTGTGAACAGTGGCATGGCCTTTGGCGCAAGGCACTGGATTTCCACTCTCCAACTTCAGTGCGAGCGTCTTGTTTTCTTCATGGCAACCAATGTTCCCATGAAGGATTCAACCGGTGTTGCTACATTGGCTGGGAGGAAAAGCATTCTGAAGTTGGCACAAAGAATGACATGGGGTTTCTGCCATGCAGTTGGTGCATCAAGCTTCCACACATGGACCAAGGTTACAAGTAAAACTGGAGAAGATATTAGGATCAGTTCACGGAAGAACTTGAACGATCCTGGTGAACCTCTTGGACTTATACTCTGCGCTGTTTCTTCTGTGTGGTTACCTGTCTCTCCTAATGTCTTGTTTGATTTCTTGAGGGATGAAACCCGCCGCACTGAGTGGGATATAATGTCCAGTGGTGGCTCAGTTCAGTCCATTGCAAATTTGGCCAAAGGACAAGACCGCGGCAATGCGGTAACCATCCAAACAATAAAATCGAAGGAAAATAGTATGTGGGTAGTGCAAGATTGCTGCACCAATGCTTATGAATCAATGGTGGTGTATGCTCCTGTGGACATCACTGGCATTCAATCTGCGATGACAGGTTGCGATTCGAGCAATCTCGCCGTACTTCCGTCGGGATTCTCGATTGTTCCTGATGGGATGGAATCAAGGCCAGTGGTGATTACTTCAAGACAGGAGGAGAAGAACACAGAAGGAGGATCCTTGTTCACCATAGCATTTCAGATTCTCACCAATGCATCTCCAACAGCCAAGTTAACGATGGAGTCTGTGGAATCAGTCAACACTCTCTTATCTTGTACTTTGAGAAATATCAGAACAAGTTTACAATGCGAAGATGGTTGA 2466 0.4582 MIEPFLLLKKHTHSSPHHPTTTTTTTFSMAADMSNTNNNNNNNNNNPSHAKDFFASPALSLSLAGIFRHAGVAAAEGEAATSNMEVEDGDEGSGGGGGVGHTVDISSENSGPTRSRSEDDYFEGEGEHEDEDIIGDDNNNNNNNKNKNKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIEKLKEKNKGLRETINKACCPNCGVATTSTRDGAIPTEEQQLRIENAKLKAEIEKLRGALGKYGGSGGGSTSPSCSSGAAGGHEQENRSSLDFYTGIFGVDKSRIMDTVNKAMEELITMATMGEPLWLRSVETGREILNYDEYIKHFSSLQNSSSNNTNTPSSSKRSIIEASRDTALVFVDLPRLLQTFLDANQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAEVQMLTPMVPTREVYFVRYSKQLSSEQWAIIDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSPVHTMYRTIVNSGMAFGARHWISTLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWGFCHAVGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVSSVWLPVSPNVLFDFLRDETRRTEWDIMSSGGSVQSIANLAKGQDRGNAVTIQTIKSKENSMWVVQDCCTNAYESMVVYAPVDITGIQSAMTGCDSSNLAVLPSGFSIVPDGMESRPVVITSRQEEKNTEGGSLFTIAFQILTNASPTAKLTMESVESVNTLLSCTLRNIRTSLQCEDG 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00160 821 CDD START_ArGLABRA2_like 323 559 - -
Aip08g00160 821 Gene3D - 394 559 IPR023393 -
Aip08g00160 821 MobiDBLite consensus disorder prediction 78 159 - -
Aip08g00160 821 Pfam START domain 331 560 IPR002913 GO:0008289
Aip08g00160 821 MobiDBLite consensus disorder prediction 31 51 - -
Aip08g00160 821 CDD homeodomain 156 207 IPR001356 GO:0003677
Aip08g00160 821 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 53 818 - -
Aip08g00160 821 Pfam Homeodomain 152 207 IPR001356 GO:0003677
Aip08g00160 821 Gene3D - 137 222 - -
Aip08g00160 821 MobiDBLite consensus disorder prediction 283 307 - -
Aip08g00160 821 MobiDBLite consensus disorder prediction 288 307 - -
Aip08g00160 821 SMART HOX_1 151 213 IPR001356 GO:0003677
Aip08g00160 821 Coils Coil 260 280 - -
Aip08g00160 821 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 818 IPR042160 -
Aip08g00160 821 ProSiteProfiles START domain profile. 319 563 IPR002913 GO:0008289
Aip08g00160 821 ProSitePatterns 'Homeobox' domain signature. 184 207 IPR017970 GO:0000981|GO:0006355
Aip08g00160 821 SUPERFAMILY Bet v1-like 582 754 - -
Aip08g00160 821 SMART START_1 328 560 IPR002913 GO:0008289
Aip08g00160 821 SUPERFAMILY Bet v1-like 321 560 - -
Aip08g00160 821 ProSiteProfiles 'Homeobox' domain profile. 149 209 IPR001356 GO:0003677
Aip08g00160 821 SUPERFAMILY Homeodomain-like 139 210 IPR009057 -
Aip08g00160 821 Coils Coil 208 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00160 Aip-Chr8 999187 1008673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00160 105 820 Homeobox Transcription Factor Family AT1G79840 63.019 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip08g00160 START 1.3e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00160 K09338 - gmx:100809926 1212.59