Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00128 ATGGCGGAAGATAATAACGAAGTCACGCAAACATTTAAGGATTTGGGATTATCTGAGGAATTGGTGGAAACTTGTGATAAATTAGGTTGGAAAAATCCATTGAAGATACAATCAGAAGCGATTCCTCTTGCACTACAAGGAAAAGATGTGATCGGACTTGCCCAAACAGGTTCTGGTAAGACTGGAGCTTTTGCACTTCCCATATTGCATGCCCTCTTAGAAGCGCCACGCCCCAATGATTTCTTTGCATGTGTGTTGTCTCCCACAAGAGAACTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTTTAGGGTCTGGGATCGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGATCGACATGGTACAGCAATCCATCAAGATAGCAAAACAGCCTCATATTATTGTCGGAACACCAGGACGCGTTTTAGATCACCTCAAAAACACCAAAGGATTTTCTCTTAATAGATTAAAATATTTGGTCCTAGATGAGGCGGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTATACAATTGATTCCTCGTGAGCGGAGAACATTTCTGTTTTCTGCTACAATGACTAAGAAGGTCCAAAAGCTCCAAAGAGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCCTCTAAGTATTCTACTGTTGACACACTGAAGCAGCAATATCGTTTCTTACCTGCCAAACACAAGGATTGCTACCTTGTGTACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACTCGTACATGTGATTCAACTCGTCTTCTTGCTTTGATTCTTAGTAATCTTGGTCTAAAAGCCATCCCAATTAATGGTCATATGACCCAGTCAAAAAGGCTTGGAGCCTTGAATTTATTCAAGTCTGGGGCTCGCAGTATTCTCATTTGTACTGATGTAGCTAGTAGAGGATTGGATATTCCAACAGTAGATGTTGTGATTAACTATGACATCCCCACAAACTCCAAAGATTATATACATCGTGTAGGAAGGACTGCTCGTGCAGGGCGTTCTGGGGTTGCAATTTCCCTTGTGAACCAATATGAGCTGGAGTGTAATGAAAATGAAGGAGGAAGCCATGGGGAAGAAGAAACGGAGAGTTGGCAACATATAGCATCTATGGAGGGCACTGATGAGATGGGGTTGGCAGAGCACAACGCCAACACTGAGGAGGAGGTCGATAACATGAACATCTGGAAGGCCGTTACAGAGAAACCAGAGGACAAAACCTTGCAGCCAATATTATTAGGGAGACTCCGAGTTACTTGGGAATTTGAATTAGTTTGA 1317 0.4252 MAEDNNEVTQTFKDLGLSEELVETCDKLGWKNPLKIQSEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLEAPRPNDFFACVLSPTRELAIQIAEQFEALGSGIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKNTKGFSLNRLKYLVLDEADRLLNEDFEESLNEIIQLIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDSTRLLALILSNLGLKAIPINGHMTQSKRLGALNLFKSGARSILICTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELECNENEGGSHGEEETESWQHIASMEGTDEMGLAEHNANTEEEVDNMNIWKAVTEKPEDKTLQPILLGRLRVTWEFELV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00128 438 Pfam Helicase conserved C-terminal domain 241 346 IPR001650 -
Aip08g00128 438 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 160 168 IPR000629 -
Aip08g00128 438 CDD DEADc_DDX47 11 215 IPR044765 GO:0005524
Aip08g00128 438 PANTHER RNA HELICASE 4 361 - -
Aip08g00128 438 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 241 407 IPR001650 -
Aip08g00128 438 SMART helicmild6 265 346 IPR001650 -
Aip08g00128 438 CDD SF2_C_DEAD 226 355 - -
Aip08g00128 438 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 10 38 IPR014014 GO:0003724
Aip08g00128 438 Pfam DEAD/DEAH box helicase 35 203 IPR011545 GO:0003676|GO:0005524
Aip08g00128 438 Gene3D - 1 219 IPR027417 -
Aip08g00128 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 361 IPR027417 -
Aip08g00128 438 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 214 IPR014001 -
Aip08g00128 438 PANTHER BNAC02G41920D PROTEIN 4 361 - -
Aip08g00128 438 Gene3D - 220 387 IPR027417 -
Aip08g00128 438 SMART ultradead3 29 229 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00128 Aip-Chr8 835559 842599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00128 6 357 Eukaryotic Initiation Factors Gene Family AT3G13920 34.637 7.04e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00128 K14777 - gmx:100775796 656.366