Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00127 ATGGCTGAGAGTGGATATGAATTGTCGGATGAAGAAGCCGATGAGTATCGAGATGTATTGCAGTTGAGTAAGGAAGATATAATGAACAAGGCATTCCGTAGCGATGAAGCAGCATATGAATTTTACAGGATGTTAGGCAAATGTTTTGGTTTTGGTATTCGAAAGGGTGACTCGGGAAAAGATGACAGTGGAAGGGTTATTCGTCGTAGATTTTTTTGTAATAGAGCGGGCCTGAGAGAACGTCGTCACTATGATAGGCTAGATAGGCAGAGAAGTCATAAACCGGAAACGCGGACAAATTGTGAGGCAAAGTTGTCAATCTTCCTTGATGTGGTCAGTGGTATATGGAGGGTGAGAAAAATAGTATTGGATCATAACCACGATTTAACTCCGACATATATGGTTCATATGATGACGAATTTTAGAGAAATAAATTGTTCCGCTAAGGCACAAATATCTGGTATGCAGGCTCATGGTGTTCCGACGTCTAAGATTCTGGGGTATATGGCTGGACAGTCTGGTGGCTATTCTCTAATGGGCTTCACTAAGAAGGATGCTTACAATTATATTAACAAGGCTAAGCGTGCAAAGATTATTGATGGGGACGCTAACGCCGCTGTTGCAGATGGTGGCAGTAGAGTTGATTACCAATACTTTGGGGATGTTCTAGCCTTTGATTCGACCTACAAGAAAAATAAATATCAGAGGCCGCTGGTGATATTTTCTGGTGTGAATAACCATAAGCAGACGACAATATTTGGGTTTGGCGTGGTGTTAGATGAAAGCGTTGGGTCTTATAAGTGGTTGCTGGAAAATTTGTTGGAAGTCATGTGTAACAAGAAGCCGTCGGTTGTCGTCACGGATGGCTGTGATTCAATGAAAGCTGCAATCAAGTCTGTTTTTCCGGAGGCAACGCATCGATTGTGTGCTTGGCATATGGAGAAGAATGTAACCGCTAATGTGAAGGAAGAGGGACTACGACAATGTTTCACCCGGTGGCTGTATTCAGAGATGGAAATAGATGAATTTGAGGCTGAGTGGGATGATGCCATTGAAGAGTATGGGTTGCAGAACAGTTTTTGGGCCAAAGAAACTTTTCAGAAGAGGATGATGTGGGCTAATGCGTATTTACAGGACAAGTTCTGTGCAGGGTTTCGGACAACATCCCGGTGCGAAGGCATTAACGCATACGTGAAGAATTTTCTTAAGTCTAGGCACAGTCTCCTTGATATGGTTAAAAATTTGGAGTTGGTCGTGCGAGAGTACCGAAATAACGAATTAGTTGCACAATTTAGATCACTCCATGGGATGCCAGTAATGACAACTTGTTTGGATCCTCTTGAAAGGTATGCTGCAGATGCATACACACGGGAGATATTCGTTGATGCGAAGAAGGAAATAGTGGGTGTCGGTGCAGTTAATTTTGTAGCCAAGATAAGACGTTCTACTACAATGGTGTACACGTTGGAGGAATACGGTGACCCAGGTAGAGAGGTGATTGTCCTGTACGATAGGGTTTCAAGGAAAATGGAGTGCGCATGCAATTTTTGGAGGCAAAAGGGAATACCTTGTAGGCATATGTTTTTTGTAATGAAGCATGAGCACTTGACTCGAATTCCTAATAGCCTGGTTCTGAAGAGGTGGCGAAAGGATGCAAAGTCGTTGGATAAGTATGCTGAGATCACGGAAGTTGGTAGTGAAATTGGTTTCTTGTTGCGCCATGGTGCACTTCATGCAGCCGCACAGTGGATGCTTTATGTTGGAGCCAAGAGCCCTTTGTCTTTCACACAGGCGCTTAAAGGTCTCCATGCGCTGTGTCAAGAACTGGATAGAGGCCCTGAAAATGGGGGTCAGAAGAAAGCTCTTGATATGGTTGACTTACACGACCCTGTTGTTGCGAAGACTAAGGGTGCCCCTCGTGTGAGGAGGCAGGGCGGACGGAAGAGGCGCTGCACCCGTTGTCGCAAAACGGGTCACACAAAACGACACTGCAATGCCGACCGGTCCTTTGTTTCCAAATCTGAAGAGAGCAAAGATTTTCAGGCTACAACTTTAGGGTCGGAGGAGTCTTCACCGACGGAATGGATCCGATTCGAACAAGGGAAGAAGGGTGTTACCGGTCCCAATAATTTGTGTGCACCGATTTGGCTGGAGGCATCAGGTTCGAAGATTACCTCACAACATGAAATTTCTGCTGCAGCTGGACATAAGGAGACTATGGAATGGGAGCCGAACACGATAAGTAACACCGACGAAGTAATAGCACAGCTGATGACTGAAATAACTTATCTCAGTTCAAGATTGGGTTCGAGCTCCGCAGCATAA 2325 0.4486 MAESGYELSDEEADEYRDVLQLSKEDIMNKAFRSDEAAYEFYRMLGKCFGFGIRKGDSGKDDSGRVIRRRFFCNRAGLRERRHYDRLDRQRSHKPETRTNCEAKLSIFLDVVSGIWRVRKIVLDHNHDLTPTYMVHMMTNFREINCSAKAQISGMQAHGVPTSKILGYMAGQSGGYSLMGFTKKDAYNYINKAKRAKIIDGDANAAVADGGSRVDYQYFGDVLAFDSTYKKNKYQRPLVIFSGVNNHKQTTIFGFGVVLDESVGSYKWLLENLLEVMCNKKPSVVVTDGCDSMKAAIKSVFPEATHRLCAWHMEKNVTANVKEEGLRQCFTRWLYSEMEIDEFEAEWDDAIEEYGLQNSFWAKETFQKRMMWANAYLQDKFCAGFRTTSRCEGINAYVKNFLKSRHSLLDMVKNLELVVREYRNNELVAQFRSLHGMPVMTTCLDPLERYAADAYTREIFVDAKKEIVGVGAVNFVAKIRRSTTMVYTLEEYGDPGREVIVLYDRVSRKMECACNFWRQKGIPCRHMFFVMKHEHLTRIPNSLVLKRWRKDAKSLDKYAEITEVGSEIGFLLRHGALHAAAQWMLYVGAKSPLSFTQALKGLHALCQELDRGPENGGQKKALDMVDLHDPVVAKTKGAPRVRRQGGRKRRCTRCRKTGHTKRHCNADRSFVSKSEESKDFQATTLGSEESSPTEWIRFEQGKKGVTGPNNLCAPIWLEASGSKITSQHEISAAAGHKETMEWEPNTISNTDEVIAQLMTEITYLSSRLGSSSAA 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00127 774 ProSiteProfiles Zinc finger SWIM-type profile. 497 535 IPR007527 GO:0008270
Aip08g00127 774 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 26 203 - -
Aip08g00127 774 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 208 559 - -
Aip08g00127 774 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 203 IPR031052 GO:0006355
Aip08g00127 774 SMART 26again6 510 537 IPR006564 GO:0008270
Aip08g00127 774 Pfam MULE transposase domain 222 316 IPR018289 -
Aip08g00127 774 ProSiteProfiles Zinc finger CCHC-type profile. 649 664 IPR001878 GO:0003676|GO:0008270
Aip08g00127 774 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 208 559 IPR031052 GO:0006355
Aip08g00127 774 Pfam FAR1 DNA-binding domain 40 130 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00127 Aip-Chr8 815302 817948 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip08g00127 MULE 2.5e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00127 - - aip:110265238 1135.94