Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00123 ATGGCGAAAGAAGGTCTTGGACTAGAAATCACGGAGCTAAGATTGGGTCTTCCCGGTGGGGATTCATCAGCATCGAAGAAGAGGGTGTTTTCGGAGATTGATGGTGGGGAAAATGGATCCTCGACGGAGAGGAATAAGAACGCGGTGGTGGGGTGGCCACCGGTGTGCTCTTACCGGAAGAAGAAGACGTCATCAAAAATGTACGTGAAGGTTAGCATGGACGGTGCTCCATTCTTGCGTAAAATTGATCTTGCCATGCACAAGGATTACTCCGACCTAGCCTTTGCCTTGGACAACCTCTTTGCTTCCTACGGAATCGATGCGGAGAATTGTGAACAAGTTCCGATTTACGAGGACAAAGATGGTGACTGGATGCTCGTCGGAGATGTTCCTTGGGAGATGTTTATTGAATCATGCAAGCGTCTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGGTCTCCAACCAAAAGGATCATTAAAGGGATTTATAGAAGGCGTGAAAAATTAA 513 0.4717 MAKEGLGLEITELRLGLPGGDSSASKKRVFSEIDGGENGSSTERNKNAVVGWPPVCSYRKKKTSSKMYVKVSMDGAPFLRKIDLAMHKDYSDLAFALDNLFASYGIDAENCEQVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKGFIEGVKN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00123 170 Pfam AUX/IAA family 39 106 IPR033389 -
Aip08g00123 170 Pfam AUX/IAA family 111 153 IPR033389 -
Aip08g00123 170 Gene3D - 60 158 - -
Aip08g00123 170 SUPERFAMILY CAD & PB1 domains 58 146 - -
Aip08g00123 170 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 153 IPR003311 GO:0005634|GO:0006355
Aip08g00123 170 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 153 - -
Aip08g00123 170 ProSiteProfiles PB1 domain profile. 66 149 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00123 Aip-Chr8 759507 762138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00123 59 151 B3 DNA Binding Superfamily AT2G46530 32.258 4.29e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aip08g00123 AUX_IAA 6.7e-39 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00123 K14484 - gmx:100811879 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00123 08 759507 762138 Aip08g00123 08 759507 762138 ECH