Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00122 ATGGCGATGTTGGATGTTGACTTTAAGCTCAGCCTCTCTCTTCCCGGTACTCAAACCGGTGGCACCAAACGCTGCCGCCGCTTTCCGGAGGAGGACACCGTTGATCTTCTTCATCCCAACGAAGAATACAATTTTTCACCAGCATCCAAGGCACAGATTGGGGGGTGGCCGCCGGTGAAGGCAAACAGAAAGTGTGGCGTGAAGGTGGGTGTGGACGGAGCACCATATCTAAGAAAAGTGGATCTTGAAGCGTATGAGAGTTATGAGCAGCTCTTCAAGGCATTGGAGACCATGTTTTGTTGCTCAACCATTATTTGTAATGAGAATAAGGTGATGGATAATTATATGCCAACTTATGAGGACAAAGATGGTGATTGGATGTTAGTTGGCGATGGGGATCTGCACCAGCACAGCAACAGATGTCGTATTATGATCATGTTCAGAGGCGACACAACGAGAAAGGAATCTTCTATGCTTGTTTGTTTACCCTGTGTTGCTGCTTCTGCTGCTATGAGAGTTGTGAATGCTGCTTGGAACGTACCTGTTGTTGTTGTCCCTAGCTACCTACTTTCAGATTCATCCTTATTGTAG 591 0.467 MAMLDVDFKLSLSLPGTQTGGTKRCRRFPEEDTVDLLHPNEEYNFSPASKAQIGGWPPVKANRKCGVKVGVDGAPYLRKVDLEAYESYEQLFKALETMFCCSTIICNENKVMDNYMPTYEDKDGDWMLVGDGDLHQHSNRCRIMIMFRGDTTRKESSMLVCLPCVAASAAMRVVNAAWNVPVVVVPSYLLSDSSLL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00122 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 141 IPR003311 GO:0005634|GO:0006355
Aip08g00122 196 Gene3D - 60 159 - -
Aip08g00122 196 ProSiteProfiles PB1 domain profile. 64 148 IPR000270 GO:0005515
Aip08g00122 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA15 7 141 - -
Aip08g00122 196 Pfam AUX/IAA family 67 131 IPR033389 -
Aip08g00122 196 SUPERFAMILY CAD & PB1 domains 59 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00122 Aip-Chr8 746618 750853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00122 60 154 B3 DNA Binding Superfamily AT2G46530 29.474 4.02e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aip08g00122 AUX_IAA 1.3e-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00122 K14484 - gmx:100500488 132.88