Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00099 ATGAATAGGGTCTCCAGAAGCATTTCAGATTTGAGTGATAATTTGCGGTGCAGAAACAATTGTTATGCCTTAGATCACAATCAAAGGCCACACAGAGCAAGCCAACCTGCTTCTCAAGCAATGAAGAAGCTTTGTGCAGAGCGTGGTGGTCAGCTTAGGCTCGGCCACTTCCGGCTCTTGCGCCTCCTAGGCCGAGGTGATATCGGAAAAGTGTTCCTGTGTGAGATCAGCAAGTCCTTGAAGCCGCAGCCCAATTGTTTGTATGCCATGAAAGTAGTGGACAGAAAGTCTCTGGCTCTGAAGAAGAAGCTGAAAAGAGCAGAGATGGAGGAACAAGTACTGAGTGTTGTTGACCACCCTTTTCTGCCAACACTTCATGCAAAATTTGATGCTCATCAATACACATGTTTTGTCATGGATTACTGCCCAGGTGGCGACTTGTTCACGCTTCAGCAGAACCAGCCAGATCTTCACTTTAATGTCTCCACAGCAAGATTCTTTGCGGCTGAGGTGCTTGTTGCTCTTGAATATCTGCATATGATGGGGATAGTGTATAGAGACCTGAAGCCAGAAAATGTGCTTATTCAAGAAGATGGACACATCATGCTCACTGATTTTGATCTCTCTCTTCACTTGGAAGTTCACCCCACTCTTCTTAAACAAGTTTCCAACAATAGGATCATGAAGAAGAATAAGCCAATGCTGTGTTGCAGCAATTCATATGATTATGAGCATATAGGTACTAGAAGCACTAGGAAGAAAGCAAGCATTATTGGTGATGATGGCCATGCACAACAGATTGAGATTTCAGCTGAGCCTAACAACGGAAGATCGCATTCTTTTGTTGGAACTCATGAGTATTTGGCACCAGAGGTGATCTTGGGGTTAGGCCATGGAAGTGCTGTTGATTGGTGGGCATTTGGTGTGTTCCTCTATGAGCTCTTATATGGAGATACACCTTTCAAAGATGCAACAAGCCATGACAAAACAATGAACAATATCCTCAGGAAACGGTTGAGTTTCCCAAGATCAGGAACAATAACACATTCTGGGGAGGATATTGCCAAGGCAGAGGATCTTATTGGGAAGCTTCTGATCAAGAATCCAAAGAAGAGAATGGGATACAACAGTGGATCTTGTGAGATTAAGAAACATGACTTCTTTCAGGGGATTAACTGGGCCTTAATCAGATCAGTTAAACCACCTCTTGTTTTCAAGAACAAGTCTGCAGGTCAACCACCTCATCAAATACCTTTCTTCTGA 1263 0.4363 MNRVSRSISDLSDNLRCRNNCYALDHNQRPHRASQPASQAMKKLCAERGGQLRLGHFRLLRLLGRGDIGKVFLCEISKSLKPQPNCLYAMKVVDRKSLALKKKLKRAEMEEQVLSVVDHPFLPTLHAKFDAHQYTCFVMDYCPGGDLFTLQQNQPDLHFNVSTARFFAAEVLVALEYLHMMGIVYRDLKPENVLIQEDGHIMLTDFDLSLHLEVHPTLLKQVSNNRIMKKNKPMLCCSNSYDYEHIGTRSTRKKASIIGDDGHAQQIEISAEPNNGRSHSFVGTHEYLAPEVILGLGHGSAVDWWAFGVFLYELLYGDTPFKDATSHDKTMNNILRKRLSFPRSGTITHSGEDIAKAEDLIGKLLIKNPKKRMGYNSGSCEIKKHDFFQGINWALIRSVKPPLVFKNKSAGQPPHQIPFF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00099 420 PANTHER PROTEIN KINASE PINOID 2 17 409 - -
Aip08g00099 420 Gene3D Transferase(Phosphotransferase) domain 1 146 406 - -
Aip08g00099 420 Gene3D Phosphorylase Kinase; domain 1 57 409 - -
Aip08g00099 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Aip08g00099 420 Pfam Protein kinase domain 258 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00099 420 Pfam Protein kinase domain 58 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00099 420 PANTHER FLIPPASE KINASE 1-RELATED 17 409 - -
Aip08g00099 420 SMART serkin_6 57 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00099 420 SUPERFAMILY Protein kinase-like (PK-like) 43 408 IPR011009 -
Aip08g00099 420 ProSiteProfiles Protein kinase domain profile. 57 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00099 Aip-Chr8 560768 562179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00099 5 410 AGC Kinase Gene Family AT2G26700 46.055 6.20e-135 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Aip08g00099 Pkinase 2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00099 K08286 - nnu:104595341 415.231