Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00097 ATGGAGATGGAGATGGAGGACTTGAATTGGAAGAAGAAGGGCACCATGTCAGTGATGGGAAGCAGGTACAAGACAGAGCTTTGCAGGAGATTCATGGCGGGTACCTGTGGGCTTGGCTCAAAATGCAGGTATGCCCATGGGCTTTCTGAGCTCAGAGGAGGATGCCCTAAAGTTTGCAGAATGTTCTCTCAGTACAGAAACTGCTCCTATGGCCACACCTGTCGCTTCCTTCACTCATCATCACCAACCACCACCTCTCACTTCCTTCATCATGCTCAACCACCAGAATACAGGCCAATGCAAACAACAAGTGCTACAAATGCCTCAAGCAGCATATTGGCAATTGATGATGATGATGATGATGATGATGATGATGAACCACCACCATGCAGAGTGAAGTGCATTTTCAAGGATCATGAACTCCAAAGGATCAGTCGCATCTATGCAGATTGGATCTAA 459 0.4706 MEMEMEDLNWKKKGTMSVMGSRYKTELCRRFMAGTCGLGSKCRYAHGLSELRGGCPKVCRMFSQYRNCSYGHTCRFLHSSSPTTTSHFLHHAQPPEYRPMQTTSATNASSSILAIDDDDDDDDDDEPPPCRVKCIFKDHELQRISRIYADWI 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00097 152 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Aip08g00097 152 SMART c3hfinal6 55 80 IPR000571 GO:0046872
Aip08g00097 152 SMART c3hfinal6 22 48 IPR000571 GO:0046872
Aip08g00097 152 PANTHER CCCH ZINC FINGER/TIS11-RELATED 16 151 IPR045877 GO:0003729
Aip08g00097 152 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 16 151 - -
Aip08g00097 152 MobiDBLite consensus disorder prediction 85 104 - -
Aip08g00097 152 Gene3D - 56 81 - -
Aip08g00097 152 Gene3D - 15 53 - -
Aip08g00097 152 SUPERFAMILY CCCH zinc finger 57 81 IPR036855 GO:0046872
Aip08g00097 152 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 23 47 IPR000571 GO:0046872
Aip08g00097 152 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 58 79 IPR000571 GO:0046872
Aip08g00097 152 ProSiteProfiles Zinc finger C3H1-type profile. 22 49 IPR000571 GO:0046872
Aip08g00097 152 SUPERFAMILY CCCH zinc finger 21 52 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00097 24 81 C3H Transcription Factor Family AT1G68200 46.154 6.43e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip08g00097 zf-CCCH 1.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00097 - K18753 ahf:112703739 302.753