Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00078 ATGGTGCAGTCAAAGAAATTCAGAGGTGTCAGGCAACGCCATTGGGGCTCTTGGGTTTCTGAGATTCGCCACCCATTATTGAAAAGGAGGGTGTGGCTTGGAACATTTGAAACTGCTGAAGAAGCAGCAAGAGCATACGATGAAGCAGCTATTTTGATGAGTGGAAGGAACGCCAAGACTAACTTCCCAGTTTCAGAGAACAATAACATTAACAACAGTTCCAGTGGCACTGCTTCTTCTTCATCTTCATCTTCCACAACAACATTCTCTGCAGTTCTTAGTGCAAAGCTGAGGAAGTGCTGCAAGTCCCCATCACCTTCTCTCACGTGCCTCAGGCTCGACACAGAGAATTGCCACATTGGTGTGTGGCAGAAGCGGGCCGGGCCTCGCTCCGAATCCAACTGGATCATGATGGTCGAGTTGGAAAGGAACAACACCACCACCCCCCTCACCACCCAACCTGCTTCTTCTTCCTTGAAGCCAGAGGAAGCCACCAATAATAACGGTGGCTTGGATGAGGAACAGAGGATTGCCCTGCAGATGATAGAAGAGCTTCTTATCTAA 564 0.4894 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVSENNNINNSSSGTASSSSSSSTTTFSAVLSAKLRKCCKSPSPSLTCLRLDTENCHIGVWQKRAGPRSESNWIMMVELERNNTTTPLTTQPASSSLKPEEATNNNGGLDEEQRIALQMIEELLI 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00078 187 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
Aip08g00078 187 MobiDBLite consensus disorder prediction 61 85 - -
Aip08g00078 187 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Aip08g00078 187 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Aip08g00078 187 MobiDBLite consensus disorder prediction 145 169 - -
Aip08g00078 187 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Aip08g00078 187 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 186 - -
Aip08g00078 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 186 - -
Aip08g00078 187 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Aip08g00078 187 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Aip08g00078 187 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Aip08g00078 187 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00078 Aip-Chr8 483149 483843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00078 1 186 AP2-EREBP Transcription Factor Family AT1G15360 63.452 1.24e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip08g00078 AP2 7.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00078 - - gmx:100796962 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00078 08 483149 483843 Aip08g00078 08 483149 483843 ECH