Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00053 ATGATGGAAGAAGATGATGATTACGTGGAGTACGTGCCTGTGGCGAAGCGCAGGGCCATGCAAGCACAGAACATCCTTCAACAAAAAGGGAAGTACTTTGTTTCTTCTTCCTCCTCCTCCTTCGTTGGCGATGATGGGAGCGAAGCGAAACCGAGCCTTCTGGTTAAGGCTTCGCAGCTGAAAAAGGAACAGCCGGAGATCAGTGCTACGGAGCAGATTCTTCAACAAGAGCAGGAGATGCTCGACAATTTGCCTGACAGAAAAACCCTTTTGTCCGTTCGTGAATTGGCGAAGGGAATCACTTACTCTGAGCCTCTGCCAACTGGGTGGAAACCACCTCTGCGCCTGAGAACCATGCCCAAAAGGGAAACTGATTTGATCCGGAAACAGTGGCATATCATTGTTCACGGTGAAGATGTCCCTTGCCCTGTTAAGAATTTCAAGGACATGAGGTTCCCTGATCCCATCTTAAACAAGCTGAGAGCAAAAGGGATAGTTCAACCGACTCCAATTCAGGTTCAGGGCCTTCCTGTCATTTTATCAGGAAGGGATATGATTGGCATTGCTTTTACCGGCTCTGGCAAGACTCTTGTCTTTGTGCTTCCAATGATCATGCTGGCATTGCAGGAGGAGATTATGATGCCTGTTGTTCCCGGAGAAGGCCCTTTTGGATTGGTTGTTTGCCCATCTAGGGAACTTGCAAGGCAGACTTATGAAGTGGTTGAGCAGTTCTTGAAGCCTTTGAGGGAAGCCGGTTATCCTGAGCTGAGGCCGTTGCTTTGTATTGGTGGGATAGACATGAGATCACAGGTGGATGTTGTGAAGAAGGGTGTTCACATTGTTGTTGCCACTCCTGGAAGATTGAAGGATTTGCTGGCAAAGAAGAAGATGAATCTTGACAGTTGTAGGTACTTGACTCTGGATGAGGCTGATAGGTTGGTGGATTTGGGGTTTGAGGATGACATTAGAGAAGTCTTTGATCACTTCAAAGCTCAGAGGCAGACCCTTCTGTTCTCTGCCACCATGCCAACCAAAATCCAGAACTTCTCAAGAAGCGCTTTGGTGAAGCCAGTTATAGTGAATGTGGGAAGGGCAGGGGCTGCAAATCTTGATGTGATTCAGGAGGTAGAGTATGTCAAGCAAGAGGCCAAAATAGTGTATCTCCTCGAGTGCCTCCAGAAAACCCCACCACCTGTTTTGGTGTTCTGCGAAAACAAGGCTGATGTGGATGACATTCATGAATATCTTCTAATGAAAGGAGTAGAGGCAGTTGCCGTTCATGGAGGCAAGGATCAAGAAGAGCGAGAGTATGCCATTGCGGCCTTTAAGTCTGGAAAGAAAGATGTGTTGGTTGCAACTGATATTGCGTCCAAGGGTCTGGATTTTCCTGATATTCAGCATGTCATCAATTATGACATGCCGGCTGAAATCGAGAATTATGTGCATAGAATTGGAAGGACTGGAAGATGTGGCAAGACTGGTATAGCAACCACTTTCATAAACAAGAACCAAAGTGAGACAACACTGCTTGATCTGAAACACCTTCTGCAAGAAGCTAAGCAGAGGATTCCTCCAGTTTTGGCAGATTTGATTGATCCCACGGAAGAAAATGATGAGATTACTGGCAAAACTGGTGTCAAGGGATGTGCATATTGTGGCGGTCTTGGTCATCGCATCCGTGATTGTCCTAAATTCGAGCATCAGAAGAGCATGGCGATTGCTAATACTAGGAAGGATTATTTTGGATCTGGTGGTTACAGGGGAGAAATTTGA 1773 0.4647 MMEEDDDYVEYVPVAKRRAMQAQNILQQKGKYFVSSSSSSFVGDDGSEAKPSLLVKASQLKKEQPEISATEQILQQEQEMLDNLPDRKTLLSVRELAKGITYSEPLPTGWKPPLRLRTMPKRETDLIRKQWHIIVHGEDVPCPVKNFKDMRFPDPILNKLRAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMLALQEEIMMPVVPGEGPFGLVVCPSRELARQTYEVVEQFLKPLREAGYPELRPLLCIGGIDMRSQVDVVKKGVHIVVATPGRLKDLLAKKKMNLDSCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFSRSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLVFCENKADVDDIHEYLLMKGVEAVAVHGGKDQEEREYAIAAFKSGKKDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLADLIDPTEENDEITGKTGVKGCAYCGGLGHRIRDCPKFEHQKSMAIANTRKDYFGSGGYRGEI 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00053 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 531 IPR001650 -
Aip08g00053 590 Pfam Zinc knuckle 548 564 IPR001878 GO:0003676|GO:0008270
Aip08g00053 590 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Aip08g00053 590 Pfam DEAD/DEAH box helicase 169 348 IPR011545 GO:0003676|GO:0005524
Aip08g00053 590 ProSiteProfiles Zinc finger CCHC-type profile. 549 564 IPR001878 GO:0003676|GO:0008270
Aip08g00053 590 PANTHER BNAA06G38640D PROTEIN 9 570 - -
Aip08g00053 590 SMART ultradead3 164 375 IPR014001 -
Aip08g00053 590 Pfam Helicase conserved C-terminal domain 384 491 IPR001650 -
Aip08g00053 590 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 9 570 - -
Aip08g00053 590 CDD DEADc_DDX41 156 361 IPR044113 GO:0000398|GO:0003724|GO:0005524
Aip08g00053 590 SMART c2hcfinal6 548 564 IPR001878 GO:0003676|GO:0008270
Aip08g00053 590 SMART helicmild6 410 491 IPR001650 -
Aip08g00053 590 Coils Coil 502 522 - -
Aip08g00053 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 360 IPR014001 -
Aip08g00053 590 CDD SF2_C_DEAD 372 500 - -
Aip08g00053 590 SUPERFAMILY Retrovirus zinc finger-like domains 548 569 IPR036875 GO:0003676|GO:0008270
Aip08g00053 590 Gene3D - 113 364 IPR027417 -
Aip08g00053 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 506 IPR027417 -
Aip08g00053 590 Gene3D - 370 532 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00053 Aip-Chr8 332603 334577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00053 146 531 Eukaryotic Initiation Factors Gene Family AT1G72730 31.105 1.36e-57 197