Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00044 ATGTCTACTAGCTGGCGTTCCAGCACTGCCGTTTCATCACCGCCAATCCCAATTCCAATTCCAATTCCAATTCCAATCCCCAACGAGGAGCCTTCATCATTCTCCACCTCCGTCTTCAACTTCTCCTCCGGAAACCCTAGGATCGAGGAGACCCGCGGCCTCATGCATCTCTTCCCCGACCAAGATCCCCCTTCTACCCTCCCTTTTGGACGCAAACCCCTCGTCTGCGTCGTCGGCGTCCCCAATCACATGACCTACGCCGACTTCTGCCAGTTCTGTGGTTCCTTCCTTCACCACATCCTTGAGATGCGCATTGTCAGAATGGATGGAACGGAAGATCAGTACAGCGTTTTGATCCGCTTCGACGATCAAGACTCCACCGACAGCTTCTTCAAGCATTACAATGGCCGCCGTTTCTCCTCTCTGGAGGTTGAGGTTTGCCGTGTTCTTTTCACGTTGGATGTGCAGTACACTGGTTCCATTGAACATGCCCAACCATCCAATGCTACCTCCACTGAACAGCCCACATGTCCAGTTTGCCTTGAGCGGTTAGATCAAGACACCAGTGGAATTCTCACCACTATATGTAATCATTCTTTTCATTGTTCGTGCATATCAAAATGGGCTGATTCTTCTTGTCCTGTGTGCCGCTATTGCCAACAGCAAGCTGAAAAATCGATATGTTCTGTTTGTCGGACCACTGAGAACCTTTGGATATGTGTTATATGCGGATTTGTTGGCTGTGGAAGATATAAAGCAGGACATGCCATCATGCACTGGAAAGAGACACAGCATTGCTATGCCCTAGATGTGGAAACTAAGCGTGTGTGGGATTTTGCGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACCGATGGGAAGTTGGTTGAGCTGAACACTCACTGTGTTCATGCAGAGAATGGGTGTGGAAGTTGCAGCTGTGAAGATAATTCTATGAGCGAGGCTTTACTTAATAGTAAAGTTGAAGCAATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATCTTATTTTGAGTCATTGTTACAAGAGGTAAAAGAAGAAACTGAGACAAAAATCTCTAAAGCTGTTCAGAAGGCTGTCAGTCTTAAACAACAGAAGATTCAGGCCAAGATTGACAGATGTAACAAAGAGAAGAAATTTCTGGAGGAGCTTAATGAGAATCTTGTTAAAAATGAGGATGCTTGGAAAGCAAAGTTGCTTGAGATTGAGGAGAGGGAAAGAAAATTCTTAAAACTGTCGGAGGAGAGAGTAGCAAACCTGGAAGAGCAGCTTAGATATCTCATGACTTGTCTAGATGATGTGAAGCCGGAACAGCAACAGTTGCCTGAGCATAACGAAATCAAAGATGGGCTTGTGTCTGCCTCATCAAAGGAATCCTCGTCAACTAATAACTCTCAGGTTGGCAAAAATCCATAA 1461 0.4517 MSTSWRSSTAVSSPPIPIPIPIPIPIPNEEPSSFSTSVFNFSSGNPRIEETRGLMHLFPDQDPPSTLPFGRKPLVCVVGVPNHMTYADFCQFCGSFLHHILEMRIVRMDGTEDQYSVLIRFDDQDSTDSFFKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICSVCRTTENLWICVICGFVGCGRYKAGHAIMHWKETQHCYALDVETKRVWDFAGDNYVHRLIQSKTDGKLVELNTHCVHAENGCGSCSCEDNSMSEALLNSKVEAIVNEYNELLATQLENQKSYFESLLQEVKEETETKISKAVQKAVSLKQQKIQAKIDRCNKEKKFLEELNENLVKNEDAWKAKLLEIEERERKFLKLSEERVANLEEQLRYLMTCLDDVKPEQQQLPEHNEIKDGLVSASSKESSSTNNSQVGKNP 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00044 486 MobiDBLite consensus disorder prediction 467 486 - -
Aip08g00044 486 SUPERFAMILY RING/U-box 193 292 - -
Aip08g00044 486 ProSiteProfiles Zinc finger UBP-type profile. 211 304 IPR001607 GO:0008270
Aip08g00044 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 218 IPR013083 -
Aip08g00044 486 SMART Zf_UBP_1 227 276 IPR001607 GO:0008270
Aip08g00044 486 CDD RRM_BRAP2_like 75 156 - -
Aip08g00044 486 Pfam Zn-finger in ubiquitin-hydrolases and other protein 228 287 IPR001607 GO:0008270
Aip08g00044 486 PANTHER BRCA1-ASSOCIATED PROTEIN 28 478 - -
Aip08g00044 486 CDD RING-H2_BRAP2 175 218 - -
Aip08g00044 486 SMART ring_2 177 216 IPR001841 -
Aip08g00044 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 300 IPR013083 -
Aip08g00044 486 MobiDBLite consensus disorder prediction 452 486 - -
Aip08g00044 486 Pfam BRCA1-associated protein 2 69 164 IPR011422 -
Aip08g00044 486 Coils Coil 342 420 - -
Aip08g00044 486 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Aip08g00044 486 Pfam Ring finger domain 176 217 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00044 173 217 C3H Transcription Factor Family AT1G72220 48.936 3.20e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00044 K10632 - gmx:100794688 766.533