Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip08g00044 | ATGTCTACTAGCTGGCGTTCCAGCACTGCCGTTTCATCACCGCCAATCCCAATTCCAATTCCAATTCCAATTCCAATCCCCAACGAGGAGCCTTCATCATTCTCCACCTCCGTCTTCAACTTCTCCTCCGGAAACCCTAGGATCGAGGAGACCCGCGGCCTCATGCATCTCTTCCCCGACCAAGATCCCCCTTCTACCCTCCCTTTTGGACGCAAACCCCTCGTCTGCGTCGTCGGCGTCCCCAATCACATGACCTACGCCGACTTCTGCCAGTTCTGTGGTTCCTTCCTTCACCACATCCTTGAGATGCGCATTGTCAGAATGGATGGAACGGAAGATCAGTACAGCGTTTTGATCCGCTTCGACGATCAAGACTCCACCGACAGCTTCTTCAAGCATTACAATGGCCGCCGTTTCTCCTCTCTGGAGGTTGAGGTTTGCCGTGTTCTTTTCACGTTGGATGTGCAGTACACTGGTTCCATTGAACATGCCCAACCATCCAATGCTACCTCCACTGAACAGCCCACATGTCCAGTTTGCCTTGAGCGGTTAGATCAAGACACCAGTGGAATTCTCACCACTATATGTAATCATTCTTTTCATTGTTCGTGCATATCAAAATGGGCTGATTCTTCTTGTCCTGTGTGCCGCTATTGCCAACAGCAAGCTGAAAAATCGATATGTTCTGTTTGTCGGACCACTGAGAACCTTTGGATATGTGTTATATGCGGATTTGTTGGCTGTGGAAGATATAAAGCAGGACATGCCATCATGCACTGGAAAGAGACACAGCATTGCTATGCCCTAGATGTGGAAACTAAGCGTGTGTGGGATTTTGCGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACCGATGGGAAGTTGGTTGAGCTGAACACTCACTGTGTTCATGCAGAGAATGGGTGTGGAAGTTGCAGCTGTGAAGATAATTCTATGAGCGAGGCTTTACTTAATAGTAAAGTTGAAGCAATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATCTTATTTTGAGTCATTGTTACAAGAGGTAAAAGAAGAAACTGAGACAAAAATCTCTAAAGCTGTTCAGAAGGCTGTCAGTCTTAAACAACAGAAGATTCAGGCCAAGATTGACAGATGTAACAAAGAGAAGAAATTTCTGGAGGAGCTTAATGAGAATCTTGTTAAAAATGAGGATGCTTGGAAAGCAAAGTTGCTTGAGATTGAGGAGAGGGAAAGAAAATTCTTAAAACTGTCGGAGGAGAGAGTAGCAAACCTGGAAGAGCAGCTTAGATATCTCATGACTTGTCTAGATGATGTGAAGCCGGAACAGCAACAGTTGCCTGAGCATAACGAAATCAAAGATGGGCTTGTGTCTGCCTCATCAAAGGAATCCTCGTCAACTAATAACTCTCAGGTTGGCAAAAATCCATAA | 1461 | 0.4517 | MSTSWRSSTAVSSPPIPIPIPIPIPIPNEEPSSFSTSVFNFSSGNPRIEETRGLMHLFPDQDPPSTLPFGRKPLVCVVGVPNHMTYADFCQFCGSFLHHILEMRIVRMDGTEDQYSVLIRFDDQDSTDSFFKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICSVCRTTENLWICVICGFVGCGRYKAGHAIMHWKETQHCYALDVETKRVWDFAGDNYVHRLIQSKTDGKLVELNTHCVHAENGCGSCSCEDNSMSEALLNSKVEAIVNEYNELLATQLENQKSYFESLLQEVKEETETKISKAVQKAVSLKQQKIQAKIDRCNKEKKFLEELNENLVKNEDAWKAKLLEIEERERKFLKLSEERVANLEEQLRYLMTCLDDVKPEQQQLPEHNEIKDGLVSASSKESSSTNNSQVGKNP | 486 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip08g00044 | 486 | MobiDBLite | consensus disorder prediction | 467 | 486 | - | - | |
Aip08g00044 | 486 | SUPERFAMILY | RING/U-box | 193 | 292 | - | - | |
Aip08g00044 | 486 | ProSiteProfiles | Zinc finger UBP-type profile. | 211 | 304 | IPR001607 | GO:0008270 | |
Aip08g00044 | 486 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 218 | IPR013083 | - | |
Aip08g00044 | 486 | SMART | Zf_UBP_1 | 227 | 276 | IPR001607 | GO:0008270 | |
Aip08g00044 | 486 | CDD | RRM_BRAP2_like | 75 | 156 | - | - | |
Aip08g00044 | 486 | Pfam | Zn-finger in ubiquitin-hydrolases and other protein | 228 | 287 | IPR001607 | GO:0008270 | |
Aip08g00044 | 486 | PANTHER | BRCA1-ASSOCIATED PROTEIN | 28 | 478 | - | - | |
Aip08g00044 | 486 | CDD | RING-H2_BRAP2 | 175 | 218 | - | - | |
Aip08g00044 | 486 | SMART | ring_2 | 177 | 216 | IPR001841 | - | |
Aip08g00044 | 486 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 219 | 300 | IPR013083 | - | |
Aip08g00044 | 486 | MobiDBLite | consensus disorder prediction | 452 | 486 | - | - | |
Aip08g00044 | 486 | Pfam | BRCA1-associated protein 2 | 69 | 164 | IPR011422 | - | |
Aip08g00044 | 486 | Coils | Coil | 342 | 420 | - | - | |
Aip08g00044 | 486 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
Aip08g00044 | 486 | Pfam | Ring finger domain | 176 | 217 | IPR001841 | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip08g00044 | 173 | 217 | C3H Transcription Factor Family | AT1G72220 | 48.936 | 3.20e-07 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip08g00044 | K10632 | - | gmx:100794688 | 766.533 |