Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00043 ATGGATGATGAAGTGAATGAATGCCTTTGCCGCACCAACAACTTTGATGAAGATTACCTCCTGAGAGATATCCTCCAGCAGCCGCAAGAAAGCAGCCAGACGGCCATCGGAAATAGGGCAACAAGTTCCTATATACTGTCTTTCGATAAATCGGCAAGTAAGAGGAGAAGAAGCGCTTCAGAGACGGCGGATCACATAATGTCAGAGAGGAACAGGAGACAGGAACTCTCTAGAAAGTTCATTGCACTTTCCGCAACTATACCTGGCTTGAAGAAGACGGAGAAGGCGCACGTACTTGAAGAAGCCATAAAGTACGTGAAAGAACTAGAAGAGCGTGTGAAGGTGCTGGAAGAAGATGGCGAGATAAGCATAACGAGATCTCGTGTGTGCGGGTGCGGCGACGAGACACTTCCAGAAGTTGAAGCAAGAGTATTGGGGAAGCAACTGCTCATCAAAATTCATTGTGCCACTCAATGCGGCGTTCTCATCCAAATACTCTCCCAACTTCAACTCCTTCATCTTTCCATTTCCAGCAGTAACGTCTTGCCATTTGGGAACACTCTTGACATCACCATTATTGCTCACATGGGTCACAAATTCAGCTTCATAGTGAAGGATCTAGTCAAAACCCTGAGACAAGTGGCTATGCTCAAGGAAGAAGAAATCAGCACCTACCAAATATACCAGCCAAGTGCACTCATTAAGACTACATCTCATGTATGA 723 0.4578 MDDEVNECLCRTNNFDEDYLLRDILQQPQESSQTAIGNRATSSYILSFDKSASKRRRSASETADHIMSERNRRQELSRKFIALSATIPGLKKTEKAHVLEEAIKYVKELEERVKVLEEDGEISITRSRVCGCGDETLPEVEARVLGKQLLIKIHCATQCGVLIQILSQLQLLHLSISSSNVLPFGNTLDITIIAHMGHKFSFIVKDLVKTLRQVAMLKEEEISTYQIYQPSALIKTTSHV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00043 240 SMART finulus 66 115 IPR011598 GO:0046983
Aip08g00043 240 Pfam Helix-loop-helix DNA-binding domain 64 110 IPR011598 GO:0046983
Aip08g00043 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 122 IPR036638 GO:0046983
Aip08g00043 240 PANTHER BHLH TRANSCRIPTION FACTOR 49 219 - -
Aip08g00043 240 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 49 219 - -
Aip08g00043 240 Coils Coil 99 119 - -
Aip08g00043 240 Gene3D - 49 123 IPR036638 GO:0046983
Aip08g00043 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00043 Aip-Chr8 285290 286179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00043 48 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.053 3.41e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip08g00043 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00043 - - aip:107614617 419.083