Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00042 ATGGAGCAGTGTTGGGAGAACTGGCCTCTACACACGGAAATAGAGCACCATGATGATGGAGATTTCTTCTTATCATTGGAGCAGTGCCAGAAGCCACCTGATTATGATGACGATTTCCTCAGAGAAATCCTGCAGATGCCACCGGATTTTAGTGACAATCATTCTACTGTGGATCTCGTCACCACCGGCACGGCGGAGAGCACGGAGGAAAAAAGGCCCAGAACATTCATTCTCTCCTTCGATAACTCAACCATAATACCTGCCATAGCAGAGTTCTTCTTATCGTGCCAGAAGCCACCTGATTATGATGACGATTTCCTCAGAGAAATCCTGCAGATGCCACCGGATTTTAGTGACAATCATTCTACTGTGGATCTCATTGTGGATCACATCATGGCTGAGAGAAAAAGAAGACAGCAACTCACCCAGATGTTCATAGCACTCTCCGCCACTATTCCTGGCTTGAAGAAGACGGACAAGGCTTCTATACTTGGGGAAGCCATCAATTACGTGAAACAGCTTCAAGAACGTGTGAGGGAGCTGGAAAAGCGGAACAATGATAATAAGAGGGGCCCAACAGAGCCAGTCATATTCCTCAACAAGACTCAGCTGTTGTGTCGGAACAACGAAGACAGCACCAGCGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGTGGAGGATTGGCGTAGCAAGGAGGAAAAACAAGTGCTCCCAGATGTTGAAGCAAGAATGCTGGAGAAGGAGAAGGAGGTGCTGATTGAGATCCACTGCGAAAAGGAGAATGGAATTGAGGTGAAGATATTGGAGCAGCTTGAAAATCTTCATCTGAGTGTGACCGGGAGCAGCGTTTTGCCATTTGGGAATTCGACTCTGGGTATTACCATCATTGCCAAGATGGGAGATGCTTACACCATGACACTCCATGATCTCCTCACAAATTTACGCCAACTGCTATTGAATATTGATCAACAACACTACTGA 981 0.4699 MEQCWENWPLHTEIEHHDDGDFFLSLEQCQKPPDYDDDFLREILQMPPDFSDNHSTVDLVTTGTAESTEEKRPRTFILSFDNSTIIPAIAEFFLSCQKPPDYDDDFLREILQMPPDFSDNHSTVDLIVDHIMAERKRRQQLTQMFIALSATIPGLKKTDKASILGEAINYVKQLQERVRELEKRNNDNKRGPTEPVIFLNKTQLLCRNNEDSTSEEEEEEEEEEVEDWRSKEEKQVLPDVEARMLEKEKEVLIEIHCEKENGIEVKILEQLENLHLSVTGSSVLPFGNSTLGITIIAKMGDAYTMTLHDLLTNLRQLLLNIDQQHY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00042 326 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 320 - -
Aip08g00042 326 Pfam Helix-loop-helix DNA-binding domain 130 175 IPR011598 GO:0046983
Aip08g00042 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Aip08g00042 326 Gene3D - 121 190 IPR036638 GO:0046983
Aip08g00042 326 PANTHER BHLH TRANSCRIPTION FACTOR 4 320 - -
Aip08g00042 326 MobiDBLite consensus disorder prediction 208 233 - -
Aip08g00042 326 Coils Coil 164 191 - -
Aip08g00042 326 MobiDBLite consensus disorder prediction 212 227 - -
Aip08g00042 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 197 IPR036638 GO:0046983
Aip08g00042 326 SMART finulus 131 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00042 Aip-Chr8 276697 280570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00042 98 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.411 1.66e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip08g00042 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00042 - - adu:107459735 501.901