Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00041 ATGTCTCAGAACTCAGAAGTCAGAAGTCATCACCACAGATTGATGGAAGAAGTTGAAATCCATGTATCCAACGGTGGCGTGGTACAAGAAGTCGGAGAGAGATTGAGTCTCCCCAAACTGATGATGATGATGATGATGAGCAAGAGCAACAGTTCCAAGTCCATAGTCAATGGTGGTAATATCGCAAAGAAGGCAAGAAGAAGCTCTTCGGAGTGCTTAGACCACATCATGGCGGAGAGGAAGAGGAGGCAGGAGATCACCCAGAAATTCATAGCACTTTCTGCCACCATCCCTCACTTGAAAAAGATTGACAAGGCGTCAATTCTTAGTGAAGCAATCGCTTATATCAAGCAACTCAAAGAGCAAGGGAAGAAGCTAGAGGAGGAAAGCAGAAAGAAGAACAGAACAGTAATAGAGTCGGTGTCGTTGGTGAACAAGAGGCATGGTGCATATGAACTAGTTGAAGCAAGGGCGTTGGAGAAGCAGGTGTTGATCCGGATCCACTGCCATGGCCACAAAGGCGTGCCCCAAGTATTCAACCATCTCACAAATCTTGATCTCTCCGTTGTAAGCACAAGTGTCTTACCCTTTGGGACCTGTGCCCTTGATATTACCATTGTTGCTCAGATGGGTGAGAAATACAGCGCAAGCATGAAGGATCTAGTTCAAAGCTTGAGACTGGCGATACCACTCTGTTAA 699 0.4607 MSQNSEVRSHHHRLMEEVEIHVSNGGVVQEVGERLSLPKLMMMMMMSKSNSSKSIVNGGNIAKKARRSSSECLDHIMAERKRRQEITQKFIALSATIPHLKKIDKASILSEAIAYIKQLKEQGKKLEEESRKKNRTVIESVSLVNKRHGAYELVEARALEKQVLIRIHCHGHKGVPQVFNHLTNLDLSVVSTSVLPFGTCALDITIVAQMGEKYSASMKDLVQSLRLAIPLC 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00041 232 PANTHER BHLH TRANSCRIPTION FACTOR 49 229 - -
Aip08g00041 232 Coils Coil 109 136 - -
Aip08g00041 232 SMART finulus 76 125 IPR011598 GO:0046983
Aip08g00041 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 137 IPR036638 GO:0046983
Aip08g00041 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 119 IPR011598 GO:0046983
Aip08g00041 232 Gene3D - 63 142 IPR036638 GO:0046983
Aip08g00041 232 Pfam Helix-loop-helix DNA-binding domain 74 120 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00041 Aip-Chr8 269012 270026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00041 53 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 35.238 7.21e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip08g00041 HLH 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00041 - - ahf:112703796 327.405