Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00039 ATGGCCACTTTCCTTCCCAAACCAGCACCATCAGAATCACCCCAATGGCTCCTCCATGTTAACATGGATCCGCAAAGCATAACCCGCTTCTTCTCGTCTGAAACTCAAAACCCTCCACAAACCAGAAATCATGAAAAAACACTCGAAGGAATCGCTGCTATTGTTGGAGAACACGTCCTCTTTGGGACAAAAAATGACAGTAACCCCACCCACCACAAAATGATGGAACATAACAAGACGGAGAATGGTCCGGTCACCAAGAGGTACAGAGGGGTCAGGAAGAGGCCCTGGGGAAGGTGGTCGGCGGAGATACGCGACCGTATTGGGAGGTGCCGCCACTGGCTTGGCACTTTCGACACCGCGGAGGAGGCGGCGCGTGCCTACGATGCGGCGGCTAGGCGCCTGAGAGGGTCCAAGGCTCGAACCAACTTCGAGATACCGTCGGTGTTGCCGGTTTCGGCGTCGTCGTCATCGTCGTCGAGCAGTGGCGGAATCCGCAAGAGGAAAGGGGCGCGCGGTGGCGATAGGAAGTGTTCGGTGGTTACCTCGGTTGCACAATTGTTCAGTTCTGGGGTGCCTGATGCGCTTGAGCTAAAGCTTGGTGTGAGGAGTGAGAATGGGAGCATTGCTGCTGATGATGTTATATATGGTTCTGTAGTAATTGAGTGCAGGGAGAATGAGACAGCAATAGTGAATACGGAGCCGGAAATCCGCCATAGTTTAAGTGAGCTTGCTGAATGCTGA 744 0.5349 MATFLPKPAPSESPQWLLHVNMDPQSITRFFSSETQNPPQTRNHEKTLEGIAAIVGEHVLFGTKNDSNPTHHKMMEHNKTENGPVTKRYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPVSASSSSSSSSGGIRKRKGARGGDRKCSVVTSVAQLFSSGVPDALELKLGVRSENGSIAADDVIYGSVVIECRENETAIVNTEPEIRHSLSELAEC 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00039 247 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Aip08g00039 247 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Aip08g00039 247 SMART rav1_2 88 151 IPR001471 GO:0003700|GO:0006355
Aip08g00039 247 MobiDBLite consensus disorder prediction 151 165 - -
Aip08g00039 247 MobiDBLite consensus disorder prediction 151 174 - -
Aip08g00039 247 SUPERFAMILY DNA-binding domain 88 145 IPR016177 GO:0003677
Aip08g00039 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 34 193 - -
Aip08g00039 247 ProSiteProfiles AP2/ERF domain profile. 88 145 IPR001471 GO:0003700|GO:0006355
Aip08g00039 247 CDD AP2 87 146 IPR001471 GO:0003700|GO:0006355
Aip08g00039 247 Pfam AP2 domain 88 137 IPR001471 GO:0003700|GO:0006355
Aip08g00039 247 Gene3D AP2/ERF domain 87 146 IPR036955 GO:0003700|GO:0006355
Aip08g00039 247 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 34 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00039 Aip-Chr8 259074 259923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00039 17 151 AP2-EREBP Transcription Factor Family AT1G80580 55.245 1.08e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip08g00039 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00039 - - twl:120007361 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00039 08 259074 259923 Aip08g00039 08 259074 259923 ECH