Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00027 ATGGTTGGCAGGGGTGGTTCGGGGACTGGCTCTGGGCGTGGCTCTGGCTCTGGCTCTGGGTCTGTGCAGCCACAATTCATTGCGAGCACTGGCTCCAATACGAATACGCCACTCATTGACAACTCAGATGTTGATCAAGTTGTTGTGCCTGATACCAGAAGCTGGAAAAATCTATTTTCTTACATGGGTCCTGGCTTTCTTGTTTCCATTGCATACATAGACCCGGGAAACTTTGAGACAGATCTTCAGTCGGGGGCTCAACATAAATACGAGCTACTTTGGATCATATTGGTGGCATCCTGCGCTGCTCTATTAATTCAATCCATGGCAGCCAATCTTGGGGTCGTTACTGGAAAGCACTTAGCAGAGCATTGTAGAAATGAATATCCTTGGGCTACCAACTTTATTCTTTGGTTTATTGCTGAAATTGCCATAGTCGCCTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTTTTCAGCATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGTACATTGATCCTCTTAGCTTTGCAGCAATATGGGGTAGTTAGAAAACTTGAATTCTTGATTGCATTTCTAGTATTTACAATTGCTGCATGCTTTTTTGCTGAGCTTGGATATGCAAAACCTGTTGCTAAAGAAGTTCTGAAGGGTCTTTTTGTGCCAGAACTAAAAGGAAGCGGTGCTACTGGTCTTGCGATTTCACTCCTAGGGGCTATGGTTATGCCTCACAATCTCTTCCTGCACTCAGCTCTGGTACTTTCTAGGAAAATACCCCGATCAGTTCGGGGAATCAAAGAGGCCTGTAGATTTTACTTGATAGAAAGTGCCTTTGCTCTTATGGTGGCCTTCCTCATAAACGTTTCTGTTATCTCTGTGAGCGGTGCTGTTTGCAATTCTTCAAATTTGAATGCAGAAGATCAGATGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTTCTACTTAGAAATGTGTTGGGCAAATGGAGTTCAAAGCTGTTTGGAGTAGCTTTACTTGCATCAGGCCAAAGTTCTACTATAACAGGAACATATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTGCGACTGGAGCCATGGGTTCGGAATATGCTAACTCGTTGTTTAGCCATAGTTCCTAGTTTGATTGTTGCGGTCATTGGTGGCTCTGCTGGGGCTGGCAAGCTCATAATAATTGCATCAATGATCTTATCATTTGAGCTTCCTTTTGCTTTAATTCCACTCCTCAAGTTCACAAGCAGCAAAACCAAGATGGGAGAGCATGTCAACTCTATCATGATTTCAGCCGTTACTTGGATAATTGGTTCCCTAATTATGGCCATTAATATATATTATCTATTGACTGGCTTTGTGAAGCTGCTTCTCCACAGTCATGTTCAAGTTGTGGCCAAGGTGTTTTTGGGCATACTAGGGTTTTCAGGCATGGCTGTATATTTGGCTGGAATAGTATATCTGGTACTTCGCAAAAATAACAAGGCTACAAGCCTTTTGACACTAACAGCACCGGAAATCCGGCAAACAGCAAATGAACAAGGCAATGCCTCTATCCATTCTCTCTCAAGAGAAGATATAGTAAGCATGCAATTGCCTCAAAGAACTAGTCCTGTTGATCTTGACTGA 1671 0.4333 MVGRGGSGTGSGRGSGSGSGSVQPQFIASTGSNTNTPLIDNSDVDQVVVPDTRSWKNLFSYMGPGFLVSIAYIDPGNFETDLQSGAQHKYELLWIILVASCAALLIQSMAANLGVVTGKHLAEHCRNEYPWATNFILWFIAEIAIVACDIPEVIGTAFALNMLFSIPVWIGVLLTGLSTLILLALQQYGVVRKLEFLIAFLVFTIAACFFAELGYAKPVAKEVLKGLFVPELKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYLIESAFALMVAFLINVSVISVSGAVCNSSNLNAEDQMSCQDLDLNKASFLLRNVLGKWSSKLFGVALLASGQSSTITGTYAGQYVMQGFLDLRLEPWVRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGEHVNSIMISAVTWIIGSLIMAINIYYLLTGFVKLLLHSHVQVVAKVFLGILGFSGMAVYLAGIVYLVLRKNNKATSLLTLTAPEIRQTANEQGNASIHSLSREDIVSMQLPQRTSPVDLD 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00027 556 Hamap Divalent metal cation transporter MntH [mntH]. 39 467 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aip08g00027 556 Pfam Natural resistance-associated macrophage protein 78 441 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aip08g00027 556 PRINTS Natural resistance-associated macrophage protein signature 165 184 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aip08g00027 556 PRINTS Natural resistance-associated macrophage protein signature 241 264 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aip08g00027 556 PRINTS Natural resistance-associated macrophage protein signature 411 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aip08g00027 556 PRINTS Natural resistance-associated macrophage protein signature 137 163 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aip08g00027 556 PRINTS Natural resistance-associated macrophage protein signature 351 370 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aip08g00027 556 PRINTS Natural resistance-associated macrophage protein signature 379 396 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aip08g00027 556 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aip08g00027 556 MobiDBLite consensus disorder prediction 10 27 - -
Aip08g00027 556 MobiDBLite consensus disorder prediction 1 27 - -
Aip08g00027 556 PANTHER METAL TRANSPORTER NRAMP1 28 556 - -
Aip08g00027 556 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 28 556 IPR001046 GO:0016020|GO:0030001|GO:0046873
Aip08g00027 556 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 57 435 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00027 Aip-Chr8 197108 200405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00027 29 556 Inorganic Solute Cotransporters AT1G15960 78.571 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00027 K21398 - gmx:100797298 909.827