Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00013 ATGAATACGATGAAGAAAGGCGGTTGCCAGAAATCTTCAATTTCAGGGCAGCCTTACAGTTCGCTGTATTTCAATCCGCTGAATGAAAATGGGGATGAGGATGAGGTGAGACAGAAGCGCACCCGCACGCGTAGCTGCAGCGACTACGGCCTTCGCAGCTTAGCCTCCGGCTTTGAGGACGATAGCAACAAGGAAAACAACGCCGCCATCATCAATGGCTCTTCTATTTCTCTTTCTCTGCCCGCTCCTAAGATTAGGAAGCACTTCCCATCAAAGTCCACAGACACGATCTTGAAGCCGTCGTCGCTCCAGTTGTGCATGCAGATGAACGAGCCTGAGAGGGCTTTTGGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCTTGGCCCTTGCCCATTGATATTGGAAGATGTACATGCCTTATTCTGAAGGAGCCCACTCCACAAGGCCATGGCACTCTCTATTCTCTTTATACCTATGAAGGTCAGGGACGCCAGAATAGGAAATTAGCAGTGGCCCATCACAAGCGGCGGAATGGCAAATCTCACTTCACAGTAGCTCAGAATGTAAAAGGACTCTTATCCAATTTAGATGATACTTTCCTTGGGACCATGACAGCTAACCTCATCGGCTCAAAATACCATATCTGGGATCAGGGATATCGACCTAATTCCCGCAATACGCAACCGAAATTACCTCTTGCTGTAGTGACGTATATACCAACAGTGGCAACATGTACCGGAAGTCACAGAAGCATGAGAGCATATATCCCCAAGCATCAATCTCTGTCACTGAAGAATGTCACACAGTTACAACATATTAAAGGGTTGCCATTGGATTGGGAGGAGAAATGGGACACAGTGCATCAACTATTCTCAAAGGTTCCACTTTACAACAAGATTTCAAAGCAATTTGAGCTTGACTTTAGAGATAAAGGAAAGGCAGAACTTAGAATCCAAAGATCGGTGAAAAATTTCCAGCTCACTTTAGAGGAGAATGGGAAGCAGACGATCCTGCAGCTAGGCAGGGTGGGAAAATCAAAATTCGTTATGGACTACAGATATCCACTGACAGGCTACCAAGCTTTTTGCATGTGTCTGGCTTCCATTGATACAAAGCTTTGCTGCACAGTGTAG 1218 0.4228 MNTMKKGGCQKSSISGQPYSSLYFNPLNENGDEDEVRQKRTRTRSCSDYGLRSLASGFEDDSNKENNAAIINGSSISLSLPAPKIRKHFPSKSTDTILKPSSLQLCMQMNEPERAFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWPLPIDIGRCTCLILKEPTPQGHGTLYSLYTYEGQGRQNRKLAVAHHKRRNGKSHFTVAQNVKGLLSNLDDTFLGTMTANLIGSKYHIWDQGYRPNSRNTQPKLPLAVVTYIPTVATCTGSHRSMRAYIPKHQSLSLKNVTQLQHIKGLPLDWEEKWDTVHQLFSKVPLYNKISKQFELDFRDKGKAELRIQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCMCLASIDTKLCCTV 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00013 405 Pfam Tub family 156 399 IPR000007 -
Aip08g00013 405 MobiDBLite consensus disorder prediction 1 41 - -
Aip08g00013 405 PRINTS Tubby superfamily signature 382 404 IPR000007 -
Aip08g00013 405 PRINTS Tubby superfamily signature 228 252 IPR000007 -
Aip08g00013 405 PRINTS Tubby superfamily signature 361 380 IPR000007 -
Aip08g00013 405 PRINTS Tubby superfamily signature 318 335 IPR000007 -
Aip08g00013 405 Gene3D Tubby Protein; Chain A 153 404 IPR025659 -
Aip08g00013 405 SUPERFAMILY Tubby C-terminal domain-like 156 404 IPR025659 -
Aip08g00013 405 MobiDBLite consensus disorder prediction 1 27 - -
Aip08g00013 405 PANTHER TUBBY-RELATED 157 403 - -
Aip08g00013 405 PANTHER TUBBY-RELATED 9 119 - -
Aip08g00013 405 PANTHER TUBBY-LIKE PROTEIN 8 157 403 - -
Aip08g00013 405 PANTHER TUBBY-LIKE PROTEIN 8 9 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00013 Aip-Chr8 126039 127884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00013 88 298 TUB Transcription Factor Family AT1G16070 45.455 2.23e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aip08g00013 Tub 7.3e-42 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00013 K19600 - rcu:8280277 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00013 08 126039 127884 Aip08g00013 08 126039 127884 ECH