Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00002 ATGCAATTAGCGTCAAATGGTGACAAGGAAGAGTGTTCAGAATCCGAACCCATCTTGAATCAGCATCTAAATTTGCAAGAATATGGAGGAGGAGGAGGAGAGTCTTCATTTTCCTGTGAAATCATTGCTGCTGCTAACGATGATTCACACCCTGTTCCTCTTGATGAGAGCTGTCATCTGGTAAATGCGGATCAGCCACAGTGCCGGATATGCCTTGATATAGGAGGAGAAGATTTGATCGCTCCTTGCCATTGCAAAGGCACCCAAAAGTATGTCCACAGATCATGTCTAGATAATTGGCGGTCTACAAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAATGTAGAGCTGTCTTCATATTACGTGCAAACGTCCCCCCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTTCTTGTTGCCAGAGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGGGTGCTTGTGTATAAATTTTATGGAGATGAACTAAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGATTGCTCTATGGATTCTTCATAGCCATAATATGCGGCCAAAGAATCAATGAACGCCACTACCATGTTCTTGCAAAACAAGAATTGACAAAGGAATATGTGGTAGAAGATCGAGAACATGTGAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAA 768 0.4193 MQLASNGDKEECSESEPILNQHLNLQEYGGGGGESSFSCEIIAAANDDSHPVPLDESCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00002 255 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 254 - -
Aip08g00002 255 PANTHER OS02G0132300 PROTEIN 2 254 - -
Aip08g00002 255 Pfam RING-variant domain 68 115 IPR011016 GO:0008270
Aip08g00002 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 120 IPR013083 -
Aip08g00002 255 ProSiteProfiles Zinc finger RING-CH-type profile. 60 122 IPR011016 GO:0008270
Aip08g00002 255 CDD RING_CH-C4HC3_MARCH 68 116 - -
Aip08g00002 255 SUPERFAMILY RING/U-box 63 119 - -
Aip08g00002 255 SMART ringv_2 67 116 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00002 Aip-Chr8 31649 35842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00002 34 214 C3H Transcription Factor Family AT1G50440 67.016 1.31e-88 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00002 - - gmx:100789593 478.789