Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03528 ATGGGGAGAGTGAAGCTTCCCATTAAGAAGATTGAGAACATAACAAATAGGCAAATTACATTCTCTAAAAGGAGAAATAGTCTCATCAAGAAAGCTTACGAGCTTTCTGTTCTCTGTGATGTTGATGTTGCTCTCATCACGTTCTCTCCTTCTGGCAGACCAGCTCTCTTCTCTTCCAGCACAAGGTTTAATTTTTCCACACTACAAACATTCATTCATTTTTATGGAAACATGAGAAGGATTAATCAATTGAAAATTGAAGCAGAACAAATATGCCAAACTGATCATTCTATGTTATGTGTTATTCAGAAAATTCAAAAAGAATTAATTATTTGCAAGTCTCAGTTAGAAAAAATGGAGAAACGGCTAAGGATATTTGAAGGTGATCCATGTGAGATCACTACACTTTGTGAGGCTGAATATCGTCAGCATATTCTTCAGCAAACTCTAGAGCAAGTGCAGTTAAGAAAGGATTCCAGATTAAGATTATTATTTTTATATCAGGTGAATCTTGCAAACACGGTAGATGTAGATGGATTATTTGTTGGCGAGACATCAAATAATCCAGTAGAGTGGCTCCCACAGGAAGATCCAAATGTTAATATTCTCAACTTTGTTGATGCCTATGCTCCTGCTCTTCTTTGGGGTCAACAATCACATAGTGCTGTTGTTGACATGTTAGGCACAAGTTCTACCCTTGTGCCTTCTACAAACACCCTTCAACTTCAAATGAATCCAGATAATAATAGTTTAGAAGTCTGCACACTATCTCCTGACTTTGGACAAGTTATAGATATCAATGGTTCCTCTTGGGAGCAACTCCATGATTTAGGGAATGGATCTTTGTCAATAGCAGAGGCAAGGGAGCAAGAACAACTAATTGAACAATATCTGTCTCAATTTCCTTCTTCAGATATCTTAATATCCGATCAACATCATCAAATATGA 948 0.3681 MGRVKLPIKKIENITNRQITFSKRRNSLIKKAYELSVLCDVDVALITFSPSGRPALFSSSTRFNFSTLQTFIHFYGNMRRINQLKIEAEQICQTDHSMLCVIQKIQKELIICKSQLEKMEKRLRIFEGDPCEITTLCEAEYRQHILQQTLEQVQLRKDSRLRLLFLYQVNLANTVDVDGLFVGETSNNPVEWLPQEDPNVNILNFVDAYAPALLWGQQSHSAVVDMLGTSSTLVPSTNTLQLQMNPDNNSLEVCTLSPDFGQVIDINGSSWEQLHDLGNGSLSIAEAREQEQLIEQYLSQFPSSDILISDQHHQI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03528 315 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip07g03528 315 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip07g03528 315 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip07g03528 315 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 271 - -
Aip07g03528 315 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip07g03528 315 Coils Coil 102 122 - -
Aip07g03528 315 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Aip07g03528 315 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Aip07g03528 315 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Aip07g03528 315 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip07g03528 315 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Aip07g03528 315 PANTHER MADS BOX PROTEIN 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03528 Aip-Chr7 125318248 125321211 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03528 1 210 Type I MADS-box Gene Family AT1G22130 38.983 7.69e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip07g03528 SRF-TF 3.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03528 - - adu:107461111 397.897