Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03527 ATGGGAAGAGTGAAGGTTCCCACTAAGAAGATTAAGAACATAACAAACAGGCAAATTACATTCTCTAAAAGGAGGAATGGTCTCATCAAGACAGCTTACGAGCTTTCTGTTCTCTGTGATGTTGATGTTGCTCTCATCACCTTCTCCCCTTCTGACAGTCCAGCTCTCTTCTTTTCCAGCACAAGGATATTTGAAGGTGATCCATGTGAGATCACTACACTTTGTGAGGCTGAATATCGCCAGCATATTCTTCAGCAAACTCTAAAACAAGTGCATCTTGTTTTGAACAGTGTGTCTTGGAGGAAGAGTTTAATTTTAGTGTATCTAATCAACAGGTATGTGAAGGTGGTTCTTGCAAACACGGTAGATGTAGATGGATTATTTGTTGGCGGGACATCAAATAATTCAGTAGAGTGGCTCCCAGAGGAAGATCCAAATGTTGATATTCTCAACTTTGTAGATGCCTATACTCCTGCTCCTCTTTGGGATCAACAATCACATAGTGCTGTTGTTGACATGTTAAGCACAAGTTCTACCCTTGTGCCTTCTACAAACACCTTTCAACTTCAAATGAATCCAGAGAATAATAGTTCAGAAGTCTGCACACTCTCTCCTGAGTTTGGACAAGTTATAGATATCAATGGTTCCTCTTGGGAGCAATTCCATGATTTAGGGAATGGATCTTTGTCAATAGCAGAGGCAAGGGAGCAAGAACAACTAATTGAACAATATCTGTCTCAGTTTCCTTCTTCAGACATCTTAATATCCAATCAACATCATAAAACATTATGA 792 0.3965 MGRVKVPTKKIKNITNRQITFSKRRNGLIKTAYELSVLCDVDVALITFSPSDSPALFFSSTRIFEGDPCEITTLCEAEYRQHILQQTLKQVHLVLNSVSWRKSLILVYLINRYVKVVLANTVDVDGLFVGGTSNNSVEWLPEEDPNVDILNFVDAYTPAPLWDQQSHSAVVDMLSTSSTLVPSTNTFQLQMNPENNSSEVCTLSPEFGQVIDINGSSWEQFHDLGNGSLSIAEAREQEQLIEQYLSQFPSSDILISNQHHKTL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03527 263 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip07g03527 263 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip07g03527 263 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip07g03527 263 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Aip07g03527 263 CDD MADS 2 60 - -
Aip07g03527 263 PANTHER MADS BOX PROTEIN 1 57 - -
Aip07g03527 263 PANTHER MADS BOX PROTEIN 58 219 - -
Aip07g03527 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Aip07g03527 263 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip07g03527 263 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip07g03527 263 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 57 - -
Aip07g03527 263 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 58 219 - -
Aip07g03527 263 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03527 Aip-Chr7 125312317 125315150 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03527 1 63 Type I MADS-box Gene Family AT1G22130 71.429 1.43e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip07g03527 SRF-TF 2.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03527 - - adu:107461168 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03527 07 125312317 125315150 Aip07g03527 07 125312317 125315150 ECH