Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03526 ATGATTTTTCCGGCGGTGACCGGTGGCGGGTTCTGCCACGATAAGCGCGGGCTTGAGGTGGAGCTGCCGTGCGCGGTGTCTCGCTACGTCTGGCGAAGGCGAATGCGGTATTTATATGGATCTAAGGAAAAGGATGTGGAGTCGGTGAGTATTGTGTACGCTGCTCCAGGGAAAAGAATAAAGGTGATAGATATGGAGAGAGTGCAGGTTCCCATAAAGAAGATTGAGAACATAACAAACAGGCAAATTACATTCTCTAAGAGGAGGAATGACCTCGTCAAAAAAGCTTATGAGCTTTCTGTTCTCTGTGATGTGATGTTGATGTTGCTCTCATCACGTTCTTCCCTTATGGCAGACCTGCTCTCTTCTCTTCCAGCACAAAGTTTAATTCCTCCTCACTACAAACATTCATTCATTTTTATGGAGTCATTATCAAGTACTCTGAGTAGAGTACAGTAA 459 0.4532 MIFPAVTGGGFCHDKRGLEVELPCAVSRYVWRRRMRYLYGSKEKDVESVSIVYAAPGKRIKVIDMERVQVPIKKIENITNRQITFSKRRNDLVKKAYELSVLCDVMLMLLSSRSSLMADLLSSLPAQSLIPPHYKHSFIFMESLSSTLSRVQ 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03526 152 ProSiteProfiles MADS-box domain profile. 65 110 IPR002100 GO:0003677|GO:0046983
Aip07g03526 152 SUPERFAMILY SRF-like 65 115 IPR036879 GO:0003677|GO:0046983
Aip07g03526 152 Gene3D - 77 129 IPR036879 GO:0003677|GO:0046983
Aip07g03526 152 PRINTS MADS domain signature 87 102 IPR002100 GO:0003677|GO:0046983
Aip07g03526 152 PRINTS MADS domain signature 67 87 IPR002100 GO:0003677|GO:0046983
Aip07g03526 152 SMART madsneu2 65 123 IPR002100 GO:0003677|GO:0046983
Aip07g03526 152 PANTHER MADS BOX PROTEIN 65 106 - -
Aip07g03526 152 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 65 106 - -
Aip07g03526 152 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 74 109 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03526 Aip-Chr7 125298553 125301389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03526 65 110 Type I MADS-box Gene Family AT1G77980 69.565 4.11e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip07g03526 SRF-TF 2.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03526 - - ahf:112705107 73.1738