Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03514 ATGGCACTAGAAGCTCTAAAATCCCCCACCGCTGCAGGACCTTCCTTCAGCTTTGAAGAAACCAATAATCTCAGCTACTTGGAAGCACCATGGGCTAAGAGAAAGCGTTCGAAGCGTGCCAACAGAATGGAACTGCCCCAAAACTGCTCGGAGGAAGAGTACCTAGCTCTCTGCCTCATCATGCTTGCTCGCGGCACCACCACCGTCCCCACAATCACAGCCACCGCCACTGCCATCCCATCCAAGCCCCACTCCTCTCCTGCTCCATCTGTTGATGAGTCGGCTCCAATTTCAACCGCCAATCTCATCTACAAGTGCTCTGTCTGCAACAAAGCTTTCTCATCTTATCAGGCGCTCGGTGGACACAAGGCCAGCCACCGCAAGTTCGCTGCTGCCACCGTTGGCGGCGAAGACCATCACTCAACCTCCTCTGCCGTCACCACCAGTTCCGTTTCCAAAGCATCCAACGGCGGAGGCAAGGCTCACGAGTGTTCCATCTGCCATAAGTCTTTTCCAACGGGACAGGCTTTGGGAGGACACAAGCGTTGCCACTACGATGGCGGCGCTGCTGCATCTGCATCGGCCGCTGCTGGTAGTGCCGTTACCGCTTCAGAAGGGGTTGGGTCTACTCACACTGTTAGCCATCGCGACTTCGATCTCAACCTGCCTGCTTTTCCAGATTTGTCCAACAAGTTCTTCGTGGAGGACGAGGTTTCCAGCCCTCTGCCGGTGAAGAAGCCCCGTCTCTTGACCCTACCGAAGATTGAAATCCCTCAATTCCATTGA 786 0.5496 MALEALKSPTAAGPSFSFEETNNLSYLEAPWAKRKRSKRANRMELPQNCSEEEYLALCLIMLARGTTTVPTITATATAIPSKPHSSPAPSVDESAPISTANLIYKCSVCNKAFSSYQALGGHKASHRKFAAATVGGEDHHSTSSAVTTSSVSKASNGGGKAHECSICHKSFPTGQALGGHKRCHYDGGAAASASAAAGSAVTASEGVGSTHTVSHRDFDLNLPAFPDLSNKFFVEDEVSSPLPVKKPRLLTLPKIEIPQFH 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03514 261 SUPERFAMILY beta-beta-alpha zinc fingers 103 184 IPR036236 -
Aip07g03514 261 MobiDBLite consensus disorder prediction 137 156 - -
Aip07g03514 261 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 253 - -
Aip07g03514 261 SMART c2h2final6 104 126 IPR013087 -
Aip07g03514 261 SMART c2h2final6 162 184 IPR013087 -
Aip07g03514 261 Pfam C2H2-type zinc finger 104 128 - -
Aip07g03514 261 Pfam C2H2-type zinc finger 161 186 - -
Aip07g03514 261 Gene3D Classic Zinc Finger 103 184 - -
Aip07g03514 261 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 253 IPR044653 GO:0003700
Aip07g03514 261 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Aip07g03514 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 184 IPR013087 -
Aip07g03514 261 MobiDBLite consensus disorder prediction 135 157 - -
Aip07g03514 261 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Aip07g03514 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 126 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03514 Aip-Chr7 125181478 125182694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03514 1 257 C2H2 Transcription Factor Family AT1G27730 45.594 6.96e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip07g03514 zf-C2H2_6 5.5e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03514 - - aip:107606374 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03514 07 125181478 125182694 Aip07g03514 07 125181478 125182694 ECH