Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip07g03479 | ATGAATTTGAAGATGGATTCTGATAAAGCGAAGCTCTTTGTTGGGGGTATCTCGCGTGACACCACCGAGTACGTACTCAGAGATCACTTCGCCAGATACGGCGTCGTTTTGGATTGCACCATCTCCTTGGACCGCACTACCCGAATCCCTAGAGGTTTCGGCTTCGTTACTTTTTCCGATCTCGCTGCTGCTGATAAAGCTCTTCAGGACACCCATGTCATACTCGGAAGAACGGTAGAAGTGAAAAAAGCAATACCAAGAAGTGAGCAGCAACACCAACACCAAAATCAAGTACAGAACAGGGGAGCGAGTAACTATAGTTGTAATGACTGTAGCAGTGACAACATTAGGACTAAAAAGATTTTTGTAGGGGGTTTGTCTGCTGGTATCTCAGAGGAGGAGTTCAGGAAATACTTTGAGCGGTTTGGTCGTATAACTGATGTAGTGGTGATGCAGGACAGCGTAACTCACCGGCCTAGGGGATTTGGTTTCATCACTTTTGATTCTGAAGAGTCGGTACAAAATGTTATGGTGAAAAGTTTCCATGATTTGAATGGTAGACAGGTGGAGGTCAAGAGAGCTGTTCCAAAAGAGGGAAACTATGGTTATGATGGTTTTAATAAGCTAAGATACAGGAGTGAAAGAGGAGCCTCTAAAGGTTTTCCTCCTTATAGTCCTAGCTGCGCAGTTCCTGGCTTTGCGCCTCAGCCATGGTATAGTAACGATGGTGTTTATGTCTATGGATCAAGCAATTATGGTTGGTACCCTATGGGTGGGTATGGAAGTAACGGATATGCAATGCCGTCTGATATTTCTAGGAACTTCTGGTATGGGCCCATGATAGCCAGTCCTCAGGGATGTCATGTGCCTTATGCTAATGCTTTGCCGAATATTGCATATATGGGTGGTAGGCTAGGAGTAGTAGGTAATGTAGTTGGAACTAGAGGGTACAATGGCATACTTGGCGCTGCAAGAAATATAAAATCTGATCAACCTCTAACTGCCAATGGATTCATTCCAGGCAATGTGACATTACATCAAGGTGTGACTCAAGATGTGGTCTCTTCTAATTTGAAAGGATCAAATGGTGAAATTTCTAGTTGA | 1104 | 0.4402 | MNLKMDSDKAKLFVGGISRDTTEYVLRDHFARYGVVLDCTISLDRTTRIPRGFGFVTFSDLAAADKALQDTHVILGRTVEVKKAIPRSEQQHQHQNQVQNRGASNYSCNDCSSDNIRTKKIFVGGLSAGISEEEFRKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNYGYDGFNKLRYRSERGASKGFPPYSPSCAVPGFAPQPWYSNDGVYVYGSSNYGWYPMGGYGSNGYAMPSDISRNFWYGPMIASPQGCHVPYANALPNIAYMGGRLGVVGNVVGTRGYNGILGAARNIKSDQPLTANGFIPGNVTLHQGVTQDVVSSNLKGSNGEISS | 367 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip07g03479 | 367 | Gene3D | - | 116 | 198 | IPR012677 | - | |
Aip07g03479 | 367 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 5 | 356 | - | - | |
Aip07g03479 | 367 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 119 | 196 | IPR000504 | GO:0003723 | |
Aip07g03479 | 367 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 5 | 356 | - | - | |
Aip07g03479 | 367 | SMART | rrm1_1 | 11 | 82 | IPR000504 | GO:0003723 | |
Aip07g03479 | 367 | SMART | rrm1_1 | 120 | 192 | IPR000504 | GO:0003723 | |
Aip07g03479 | 367 | Gene3D | - | 2 | 113 | IPR012677 | - | |
Aip07g03479 | 367 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 10 | 86 | IPR000504 | GO:0003723 | |
Aip07g03479 | 367 | SUPERFAMILY | RNA-binding domain, RBD | 6 | 106 | IPR035979 | GO:0003676 | |
Aip07g03479 | 367 | SUPERFAMILY | RNA-binding domain, RBD | 91 | 206 | IPR035979 | GO:0003676 | |
Aip07g03479 | 367 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 12 | 79 | IPR000504 | GO:0003723 | |
Aip07g03479 | 367 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 121 | 187 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aip07g03479 | Aip-Chr7 | 124699289 | 124701247 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip07g03479 | 12 | 283 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 24.910 | 3.20e-15 | 75.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip07g03479 | K14411 | - | gmx:100816822 | 545.043 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aip07g03479 | 07 | 124699289 | 124701247 | Aip07g03479 | 07 | 124699289 | 124701247 | ECH |