Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03426 ATGGCGGGAAGAATGAGAGTGAAGGAGGAAGAGGAGACTGTGGTTTTGTGTGGGAGCGGACCAGGTGGTTCATCTTCTTCATCAAGCGTGTCACCGCAACCCATGGAAGGGTTGCACGATGTGGGACCACCACCGTTTCTGACGAAGACCTTCGAAGTGGTGGAGGATCCTTCCACCGACTCCATTGTTTCTTGGAGCAGAGCTCGCAACAGCTTCGTTGTGTGGGACTCGCACAGATTCTCCACCACAATCTTGCCTCGTTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTACGGGTTTAGGAAAGTGGATCCTGATCGATGGGAATTTGCGAACGAGGGTTTCTTGGCAGGGCAGAAGCATTTGTTGAGGACGATAAAGAGGAGGAGGAATGTGACGCAGTCGTCAACGAACATGATCCAGCACGGAGAAGGAGGAGGAGGAGGAAGTTGTGTTGAGTTAGGTGAGTTTGGTTTGGAAGGTGAAATAGAGAGGCTGAGAAGGGATAGGACGGTGTTAATGGCGGAGATCGTGAAGCTGAGGCAGCAACAGCACAACTCGAGGGAGCGGATTTGTTCAATGGAGTCAAGGTTGCAAGTCACAGAGAAGAAACAAACTCAGATGATGACTTTCCTGGCCAAAGCACTCCACAACCAATCTTTCATTCATAACCTTTCTCTTCAGAACAGAGAATTACAGGGTTTTGAGATGAGCAGGAAGAGGAGAATAACTGCTACCGCAAGTGTGGAGAATCTGCAATTGGATCCTGTTGCTGTTGGAGAAGAGCAAGAGGAATTGGAGACACTTTTGTCAAGTGCTTGCGATAATGAATCAAGCAGTGAAATGAAGGAGACTACTACTACTGCTGCTGCTGCTACCAGTGAGAATATATGGGAAGATTTGCTTAGTGAGGATTTAGTTGGTGGGAATCCGGAGGATGAAGTTGTGATTGGTGATTACCCGCACCAAAATCTTGAAGATTTGGCTGCAACAAACACTGGCGACGTGAGAAGAAGATAA 1038 0.4807 MAGRMRVKEEEETVVLCGSGPGGSSSSSSVSPQPMEGLHDVGPPPFLTKTFEVVEDPSTDSIVSWSRARNSFVVWDSHRFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLRTIKRRRNVTQSSTNMIQHGEGGGGGSCVELGEFGLEGEIERLRRDRTVLMAEIVKLRQQQHNSRERICSMESRLQVTEKKQTQMMTFLAKALHNQSFIHNLSLQNRELQGFEMSRKRRITATASVENLQLDPVAVGEEQEELETLLSSACDNESSSEMKETTTTAAAATSENIWEDLLSEDLVGGNPEDEVVIGDYPHQNLEDLAATNTGDVRRR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03426 345 SUPERFAMILY "Winged helix" DNA-binding domain 42 135 IPR036390 -
Aip07g03426 345 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 25 311 - -
Aip07g03426 345 Gene3D - 39 136 IPR036388 -
Aip07g03426 345 PRINTS Heat shock factor (HSF) domain signature 46 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip07g03426 345 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip07g03426 345 PRINTS Heat shock factor (HSF) domain signature 97 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip07g03426 345 MobiDBLite consensus disorder prediction 19 34 - -
Aip07g03426 345 SMART hsfneu3 42 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip07g03426 345 MobiDBLite consensus disorder prediction 1 38 - -
Aip07g03426 345 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 311 IPR027725 -
Aip07g03426 345 ProSitePatterns HSF-type DNA-binding domain signature. 85 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip07g03426 345 Coils Coil 169 189 - -
Aip07g03426 345 Pfam HSF-type DNA-binding 46 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03426 Aip-Chr7 124049827 124051418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03426 32 335 HSF AT2G26150 52.830 2.89e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip07g03426 HSF_DNA-bind 2.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03426 K09419 - gmx:100794605 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03426 07 124049827 124051418 Aip07g03426 07 124049827 124051418 ECH
Aip06g03547 06 132912553 132915381 Aip07g03426 07 124049827 124051418 PCT