Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03345 ATGTCACCGCCGGTATTTAACATAGCGGGGGAGGAGGAGGGCAAAAGCAATGTCACTTTGTTGGTTTCGTCGACTGCTATGGAATGTGCTCGCATCGAGAGCTCCGAGTTGAAAGTGCGCAACTACATGGAATTGTCTGGTTGTTCTTCTGCTGACAGCTCGGTTTCGCCCTTACCGGACGAGCATAAAAGTAATCTGAACCTGAAAGCTACCGAACTCAGGCTTGGTCTCCCGGGATCTCAGTCTCCTGAGAGAGATTCTGATCATTGCTTAAGAAGCTCAACTCAGTTTGATGAGAAACCTTTTTTCCCCCTGTGCCCCTTGACCGACGATCATCATCAATCCCCTGCAAAGGCTGCTGTTTTGGGTAACAAAAGAGGATTCTTAGATGTAATGAATGGGTTCCAGAAGGGGAATTTTTTATCTAATTCAGAAGTGAATACAATTCTGTCGCCGAGGCCTTCTTCTAACTTAGGATTGAAACCTGGTTCTATGCTTGAGAGTCTTGGGGTTCAACAAGCCATAAAGAAAGAAGTTTCGACTACAAAGGTTGGGGTCGAGAAGCCTCATGCTTTCAATGAGACCAGACCCAGTCTTAATGGTTCTGCGAATAATAATAGCAGTGCACCAGCTACCAAGGCTCAGGTCGTGGGGTGGCCTCCCCTAAGGTCATTTAGGAAGAATTCACTGGCAACTAATTCGAAAAACACAGAAGAAGTAGATGGACAACCGGGGTCCGGTCCACTGTTTGTCAAGGTCAGCTTGGAGGGTGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATACCCGGAACTATGTTCTGCTCTAGAGAAGATGTTCCGCGGTTTTACTATAAGTCAATGCGGATCTTATGGGACTCTGGGAAAGGAGTTGCTGAATGAAACCAAGCTGAAGGATCTTCTTCATGGGTCGGAATATGTTCTTACCTATGAAGACAAAGATAATGATTGGATGCTTGTGGGTGATGTTCCATGGGAGATGTTTATCGAAACATGCCGAAGGCTGAGGATCATGAAGAGTTCAGAAGCAATTGGCCTTGCTTGCAGCTCCAAGGGCTGTTGA 1092 0.4606 MSPPVFNIAGEEEGKSNVTLLVSSTAMECARIESSELKVRNYMELSGCSSADSSVSPLPDEHKSNLNLKATELRLGLPGSQSPERDSDHCLRSSTQFDEKPFFPLCPLTDDHHQSPAKAAVLGNKRGFLDVMNGFQKGNFLSNSEVNTILSPRPSSNLGLKPGSMLESLGVQQAIKKEVSTTKVGVEKPHAFNETRPSLNGSANNNSSAPATKAQVVGWPPLRSFRKNSLATNSKNTEEVDGQPGSGPLFVKVSLEGAPYLRKVDLKNYSTYPELCSALEKMFRGFTISQCGSYGTLGKELLNETKLKDLLHGSEYVLTYEDKDNDWMLVGDVPWEMFIETCRRLRIMKSSEAIGLACSSKGC 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03345 363 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 360 IPR003311 GO:0005634|GO:0006355
Aip07g03345 363 Pfam AUX/IAA family 71 357 IPR033389 -
Aip07g03345 363 SUPERFAMILY CAD & PB1 domains 244 349 - -
Aip07g03345 363 Gene3D - 245 362 - -
Aip07g03345 363 MobiDBLite consensus disorder prediction 195 213 - -
Aip07g03345 363 PANTHER AUXIN-INDUCED PROTEIN 23 360 - -
Aip07g03345 363 ProSiteProfiles PB1 domain profile. 248 350 IPR000270 GO:0005515
Aip07g03345 363 MobiDBLite consensus disorder prediction 180 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03345 Aip-Chr7 122870495 122872282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03345 250 353 B3 DNA Binding Superfamily AT1G19220 33.654 2.47e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aip07g03345 AUX_IAA 7.2e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03345 K14484 - gmx:100815447 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03345 07 122870495 122872282 Aip07g03345 07 122870495 122872282 ECH