Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03335 ATGTCTACCCAAGGGGTGCGGTTGCACATTCAAGATCGCTATGTGGTGATGGATAATGGTATAGTTCAAGTGACGTTATCGAATCCAGGTGGAATTGTTACTGGGATAGCATATAATGGTGTTGATAATTTGCTTGAAGTTCTCAACAAGGAGACTAATAGAGGGTACTGGGATCTTGTTTGGGGTGCACCAGGAATCAAAGGAACTTTTGATGTGATTCAAGGAACGTTTTTCAGAGTTATAGTTCAAAATGATGAACAAGTTGAGGTTTCGTTTACAAGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTCCCCTTAAACATTGACAAAAGATTCATACTGCTCCGAGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTAAGTGGATGGCCAGACTTTGATCTTAGTGAAACAAGGATCACTTTCAAGCTTAGAAAACACATGTTTCAATACATGGCTATGGCAGACAACAGGCGAAGGCTTATGCCTCTTCCGGATGATCGATTACCAGGGAGATGCCAAACCTTGGCATACCCAGAAGCTGTCAAATTAGTCAATCCCAAGGATCCTCAACTGAAAGATGAGGTGGATGACAAGTATCAATATTCCTGCGACAACATAGATAATAAAGTCCATGGGTGGATATCTTTCAATCCACCAGTGGGATTTTGGCAGATCACACCAAGTGATGAGTTTCGTTCTGGTGGACCGCACAAGCAGAATTTGACCTCTCATGTAGGCCCCACCACACTTGCAATGTTTCTTAGTGGTCACTATGCGGGGCAAGATTTGAACCCCAAATTCAAAGATGGTGAACCATGGAAGAAGGTTTTTGGTCCAGTATTCATATATCTTAATTCTGGACCAGTTGGTGATGACCCACATTGGCTCTGGGAGGACGCCAAAATACAGATGATGAATGAAGTTCAAAGCTGGCCATATTCTTTCCCAGCTTCAGAGGATTTTCCAAAGTCGGATCAAAGGGGCAACGTTGGTGGCAGACTGCTCGTCTTAGACAGATATGTTAGCACAGACTTAATATCTGCAAATGGTGCTTATGTTGGTCTAGCCCTGCCAGGAGATGCCGGGTCATGGCAAAGAGAATGCAAGCACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACAATCAGGAACATACGTGCTGGCGACTATAACCTTTATGCCTGGGTTCCTGGTTTTGTTGGGGACTACAAATTGGATGATTTGATGAAGATAACCCCAGGTTCTAATATTGAAGTGGGTGAACTGGTATATGAGCCTCCAAGGGTTGGTCCAACATTGTGGGAAATAGGTATTCCTGATCGAACTGCTGCAGAATTTTATGTTCCTGATCCCAAGCCAGAACATATTAATAAGCTTTTTATCAACCATCCTGAAAGGTTCAGACAGTACGGATTATGGGAAAGGTATACAGAATTGTATCCGGAATCAGATTTGGTTTACACGGTTGGTGTCAGTGACTATAGGAGAGATTGGTTTTATGCCCATATTCCTAGAAAGAAAGAGGATAATACCCATCAAGGAACAACTTGGCAAATCAAGTTTGAACTCAATGATGTGGTTCAAGGAAGTACTTATACACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTAAATGATCCGAATGCAAGGCGTCCTGTGTTTACGACTGGGCTAATAGGGAGGGATAACTCGATTGCAAGACATGGAATTCATGGACTCTATTGGCTGTACAGTGTGAATGTACCTGGTTCTCTTCTTATAAATGGCCCCAACACTTTATATTTTACTCAACCACGTTGCAACAATTGTTTCCAGGGTATCATGTATGATTATATTCGTATGGAAGGACCACCTTGA 1899 0.4229 MSTQGVRLHIQDRYVVMDNGIVQVTLSNPGGIVTGIAYNGVDNLLEVLNKETNRGYWDLVWGAPGIKGTFDVIQGTFFRVIVQNDEQVEVSFTRMWDPSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLSGWPDFDLSETRITFKLRKHMFQYMAMADNRRRLMPLPDDRLPGRCQTLAYPEAVKLVNPKDPQLKDEVDDKYQYSCDNIDNKVHGWISFNPPVGFWQITPSDEFRSGGPHKQNLTSHVGPTTLAMFLSGHYAGQDLNPKFKDGEPWKKVFGPVFIYLNSGPVGDDPHWLWEDAKIQMMNEVQSWPYSFPASEDFPKSDQRGNVGGRLLVLDRYVSTDLISANGAYVGLALPGDAGSWQRECKHYQFWTRADENGFFTIRNIRAGDYNLYAWVPGFVGDYKLDDLMKITPGSNIEVGELVYEPPRVGPTLWEIGIPDRTAAEFYVPDPKPEHINKLFINHPERFRQYGLWERYTELYPESDLVYTVGVSDYRRDWFYAHIPRKKEDNTHQGTTWQIKFELNDVVQGSTYTLRVAIASATLAELQIRVNDPNARRPVFTTGLIGRDNSIARHGIHGLYWLYSVNVPGSLLINGPNTLYFTQPRCNNCFQGIMYDYIRMEGPP 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03335 632 SUPERFAMILY Galactose mutarotase-like 18 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Aip07g03335 632 CDD RGL4_N 6 292 - -
Aip07g03335 632 CDD RGL4_M 331 430 IPR029413 -
Aip07g03335 632 Gene3D - 8 304 IPR014718 GO:0030246
Aip07g03335 632 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Aip07g03335 632 Pfam Rhamnogalacturonate lyase family 6 200 IPR010325 -
Aip07g03335 632 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Aip07g03335 632 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 - -
Aip07g03335 632 SUPERFAMILY Galactose-binding domain-like 438 629 IPR008979 -
Aip07g03335 632 Gene3D - 437 629 - -
Aip07g03335 632 Gene3D - 329 427 - -
Aip07g03335 632 SUPERFAMILY Starch-binding domain-like 369 427 IPR013784 GO:0030246
Aip07g03335 632 CDD RGL4_C 442 629 - -
Aip07g03335 632 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03335 Aip-Chr7 122689041 122694996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03335 1 632 Polysaccharide Lyase AT1G09910 70.253 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03335 K18195 - gmx:100814185 1132.47