Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03334 ATGGTGGTGGTGGAGAATGGCATAGTAAGAGTAACGATTTCAAATCCAGAAGGAATAGTGACTGGAATTCAGTATAATGGAATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAACTACAGGAACCACTGGCAAATTTGACGTAATAAAAGGAACCGCTTTCAAAGTAATAATGGAAAATGAGGATCAAGTTGAGATTTCTTTCACAAGAACATGGGACGTGTCCCTCAAAGACCAGCTAGTTCCTTTGAATATCGATAAAAGGTTCATAATGCTTCGTGGTACTTCGGGGTTCTATTCATATGCTATTTACGAACACTTAAGCGAGTGGCCTGCTTTTAATCTTGACGAAACCAGAATTGCTTTCAAGCTCAGAAAAGACAAGTTCCATTATATGGCAATGGCGGATAACCGACAAAGAAACATGCCTCTTCCTGATGATCGAGTGCCACCAAGAGGCCAACCCCTTGCATATCCCGAAGCAGTTCTTTTTGGCGATCCTCTTGAACCTGAAttcaaaggagagGTGTTTCTAAGTGCCCATTATAGTGGAGAGGACTTGGTGCCAAAATTCAAAGAAGGAGAAGCATGGAAGAAGGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTCCTAATGACGATAATGGTGATGTTGAACCCCATAAAATGCTCTGGGAAGATGCTAAACTTCAGATGAATGTAGAAGTACAAAGTTGGCCTTACACTTTTCCCGAATCAGATGATTACCCAAAGTGGTACGAACGGGGTATTGTTACTGGCAGGTTATTAGTTAGAGAGAGGTATGTTATCCGCTTTTTAGTTCggttatATGTTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTCTGGAGTGAAGCAGATGAAGATGGGTATTTCTCCATCAGCAATGTACGAGCTGGTGACTATAATTTATATGCATGGGTACCTGGTTTTATTGGAGACTACAAATACAATAATTCAATTATAACCATAGCGGAAGGGTCTACTACTTTGATTGAATTGGGTGATCTTGCTTATGAGCCACCAAGAGATGGACCAACACTTTGGGAAATAGGGATTCCAGATCGTGTAGCTGCAGAGTTCTATGTTCCTGATCCAAATCCCAAATACATCAACAAACTCTACGTTAATCATCCTCAAAAATTTAGGCAATATGGATTATGGGAGAGATATGCAGAATTGTACCCCGACAAAGATTTAATCTACACTGTTGGAGTTAGTGATTACACCAAAGATTGGTTCTTTGCCCAAGTTACAAGGAAGAAAGACGACAATACATATCAAGGAACCACTTGGCAGATCAAGTTTCAGCTTTCCAATGTAAACAAAACCGGTACCTATAAACTGCGCCTGGCTTTGGCTTCCGCTACATTTTCTGAACTCCAGGTGCGAGTTAATGATCCAAAGGCAAGTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCAAGGCATGGAATTCATGGACTCTATTGGCTTTTCAATGTGGACATTCAAGGAACCAAACTTGTTGAAGGAGATAACACCATTTTTCTAACACAAGCTAGAGGCAATACCCCATTTCAGAACATTATGTATGATTACGTTCGTTTGGAAGGTCCACCACAACCACCTAGTTTAAATAAAAACATTTAA 1713 0.3975 MVVVENGIVRVTISNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDLVWSSPTTTGTTGKFDVIKGTAFKVIMENEDQVEISFTRTWDVSLKDQLVPLNIDKRFIMLRGTSGFYSYAIYEHLSEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRVPPRGQPLAYPEAVLFGDPLEPEFKGEVFLSAHYSGEDLVPKFKEGEAWKKVFGPVFIYLNSPNDDNGDVEPHKMLWEDAKLQMNVEVQSWPYTFPESDDYPKWYERGIVTGRLLVRERYVIRFLVRLYVGSWQRECKNYQFWSEADEDGYFSISNVRAGDYNLYAWVPGFIGDYKYNNSIITIAEGSTTLIELGDLAYEPPRDGPTLWEIGIPDRVAAEFYVPDPNPKYINKLYVNHPQKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFQLSNVNKTGTYKLRLALASATFSELQVRVNDPKASRPLFSSGLIGRDNSIARHGIHGLYWLFNVDIQGTKLVEGDNTIFLTQARGNTPFQNIMYDYVRLEGPPQPPSLNKNI 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03334 570 CDD RGL4_C 371 558 - -
Aip07g03334 570 SUPERFAMILY Galactose-binding domain-like 366 558 IPR008979 -
Aip07g03334 570 Pfam Polysaccharide lyase family 4, domain II 292 352 IPR029413 -
Aip07g03334 570 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 190 562 - -
Aip07g03334 570 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 190 - -
Aip07g03334 570 Pfam Rhamnogalacturonate lyase family 2 190 IPR010325 -
Aip07g03334 570 Gene3D - 267 356 - -
Aip07g03334 570 Gene3D - 367 558 - -
Aip07g03334 570 SUPERFAMILY Starch-binding domain-like 265 354 IPR013784 GO:0030246
Aip07g03334 570 CDD RGL4_M 268 359 IPR029413 -
Aip07g03334 570 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 190 - -
Aip07g03334 570 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 190 562 - -
Aip07g03334 570 Pfam Polysaccharide lyase family 4, domain III 369 557 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03334 Aip-Chr7 122678494 122687510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03334 2 562 Polysaccharide Lyase AT1G09910 56.439 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03334 K18195 - gmx:100814721 924.85