Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03333 ATGAACAACTACTTCTTCCTCTTCCTCTTCCTCTCTTCTTTTACCTATTCATCAGGGGTGCGCTTGGACATTCACGATAAACATGTGGTTATGGATAATGGCATAGTTGAGGTCACAATATCAAATCCTGAAGGATTTGTTACAGAGATTCGGTATAATGGAATCGACAATTTGCTTGAACTTCTTAACAAGGAATCTAACCGAGGGTACTTTGATATGGTGTGGGATGAAGGTAAGTCAAAGAGGAAAAAAGGTGAATTTGACAGAATGGAAGCTACAAATATGAGTGTGATAGTGGAAAATGAGGAACAAGTGGAGCTATCATTCACCAGAATGTGGAATTCTTCCCTTCAGGGATTGTATCCCCCACTCAACATTGATAAAAGGTTTGTAATGGTTAGTGGGTCGTCGGGGTTCTATACCTATGCAATATACGAGCATTTGGATGAATGGCCAGGATTCAATCTCTCCAATACAAGGATTGCTTTCAAGCTTAGAAAGGACAAGTTCCATTACATGGTGGTAGCAGGGGACAGACAGAGATTTATGCCTCTTCCTGATGATAGAGAAGAAGGAAGAGGCCAAGTTCTTGCTTATCCTGAAGCTGTCTTGCTTCTCAATCCTATTGAGCCTCAATTCAAAGGAGAGGTGGATGACAAGTATCAATATTCATGTGAGAGTAGAAAGAACCAAGTTCATGGTTGGATATCCATGGATCCACCCAAGTCCACCGGCTTCTGGATCATCACCCCAAGCAATGAGTTCCGATCCGGCGGCCCGCTCAAACAATATCTCGCTTCTCACGTCGGCCCCACTTCTCTATCCGTATTCCATAGCACACACTATTCCGGGGTAGATCTGATAATGAGGTTTAGGCCCAATGAAGCCTGGAAGAAAGTATATGGGCCCATATTTATATATCTTAATTCACTCTCTAATGGAGAAAGCCCAACCGGGCTCTGGGACGACGCCAGACAACAGatggtgaatgaaaTTGAAAGCTGGCCCTATAAGTTTCCAGCTTCGGAGGAGTATGTGAAAGCTGAGCAAAGGGGTCAAGTTGAAGGAAGATTGCTTGTCCGAGACAGGTACATGAGTGATGCATTCATCCCAGTTAGCAGTGCTTCTGTGGGATTAGCTTCTCCAGGAGAGCCTGGCTCTTGGCAAAGGGAATCCAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTACTAACATACTCCCTGGGGAATATAATCTCTACTCCTGGGTCAAAGGATACATTGGTGACTATAAATATGATAAAGTCATTAACATAACTTCAGGGAGTGAAGTTAATGTGGGTGAAATTGTTTATGAGGCACCAAGAGAAGGTGCTACTTTGTGGGAAATAGGTATACCTGATCGTTCTGCTGCTGAGTTCTATGTTCCTGATCCTAACCCCAAATACATTAACAGAATTTATGTCAACCATACAGATAGGTATAGGCAATATGGTTTGTGGGAGAGATATGCTGATTTGTATCCAAAAGAAGACTTAGTATACAATGTTGGCACAAGTGACTATACAAAAGATTGGTTCTTTGCTCAGGTTAACAGGAAGAAGGAGAATAAGACATACCAAGCAACCACTTGGCAAATTAATTTCAATTTGGAAAATGTGAATGCCAATGGAACTTACAAATTGCGAGTGGCTCTGGCCTCTGTACATTATGCCGAGTTACAGATTCGGGTGAAGAATTCATCAGAAGCAAATCCACCATTATTTACAAGTGGAGTTATTGGATCAGAAAACACCATAGCTAGACATGGAATTCATGGGTTCTATTGGCTTTTCAACGTTGATATAAAAGGCACTCTTCTTGCACAGGGAAATAATTCAATCTTTTTTTCACAACCCAATAATACAAGTCCATTTCAAGGAATTTTGTATGATTATATTCGTCTAGAAGCACCACCCCATCACACAAATTTCACACCAAAATTAAATATTCTTCCAAATTAA 2001 0.4083 MNNYFFLFLFLSSFTYSSGVRLDIHDKHVVMDNGIVEVTISNPEGFVTEIRYNGIDNLLELLNKESNRGYFDMVWDEGKSKRKKGEFDRMEATNMSVIVENEEQVELSFTRMWNSSLQGLYPPLNIDKRFVMVSGSSGFYTYAIYEHLDEWPGFNLSNTRIAFKLRKDKFHYMVVAGDRQRFMPLPDDREEGRGQVLAYPEAVLLLNPIEPQFKGEVDDKYQYSCESRKNQVHGWISMDPPKSTGFWIITPSNEFRSGGPLKQYLASHVGPTSLSVFHSTHYSGVDLIMRFRPNEAWKKVYGPIFIYLNSLSNGESPTGLWDDARQQMVNEIESWPYKFPASEEYVKAEQRGQVEGRLLVRDRYMSDAFIPVSSASVGLASPGEPGSWQRESKGYQFWTITDDKGYFSITNILPGEYNLYSWVKGYIGDYKYDKVINITSGSEVNVGEIVYEAPREGATLWEIGIPDRSAAEFYVPDPNPKYINRIYVNHTDRYRQYGLWERYADLYPKEDLVYNVGTSDYTKDWFFAQVNRKKENKTYQATTWQINFNLENVNANGTYKLRVALASVHYAELQIRVKNSSEANPPLFTSGVIGSENTIARHGIHGFYWLFNVDIKGTLLAQGNNSIFFSQPNNTSPFQGILYDYIRLEAPPHHTNFTPKLNILPN 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03333 666 Pfam Rhamnogalacturonate lyase family 24 217 IPR010325 -
Aip07g03333 666 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 6 650 - -
Aip07g03333 666 Pfam Polysaccharide lyase family 4, domain III 459 648 IPR029411 -
Aip07g03333 666 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 6 650 - -
Aip07g03333 666 CDD RGL4_N 25 310 - -
Aip07g03333 666 Gene3D - 346 447 - -
Aip07g03333 666 Pfam Polysaccharide lyase family 4, domain II 374 445 IPR029413 -
Aip07g03333 666 Gene3D - 21 322 IPR014718 GO:0030246
Aip07g03333 666 SUPERFAMILY Galactose-binding domain-like 457 649 IPR008979 -
Aip07g03333 666 SUPERFAMILY Starch-binding domain-like 346 447 IPR013784 GO:0030246
Aip07g03333 666 SUPERFAMILY Galactose mutarotase-like 28 312 IPR011013 GO:0003824|GO:0005975|GO:0030246
Aip07g03333 666 Gene3D - 456 649 - -
Aip07g03333 666 CDD RGL4_C 461 649 - -
Aip07g03333 666 CDD RGL4_M 350 449 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03333 Aip-Chr7 122635714 122658865 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03333 18 651 Polysaccharide Lyase AT1G09890 65.306 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03333 K18195 - gmx:100786488 1047.73