Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03332 ATGTCGTCGCAGGCAGTGAAGTTGCGTGCCGACGACAATTATGTTGTGATGGACAATGGTATACTTGAAGTGTATTTTTCCAAAAAGGGTGGATTTATCACTGCAATACAATATAATGGTGTTGATAATTTGCTTGAAGTTCTTAATGAAGCAGATGATAGAGGGGTAATGGGGACAAGTTATGAAGTTATAGTGCAAAATGATGAAAAATTGGAGATTTCATTTACCAAAACATGGGATCGATCATCCATGGAGGAAAAGCAGTCTCCTCTAAATATTGACATTAGATATGTGATGCTACGCAATTCCTCTGGCTTGTATTGTTATAGCATCTTTGAACACCGAAAAGAATGGCCTGCTTTCAACGTTCCCCAAATCAGAATGGTCTTTAAGCTTCGAAAAGATAAGTTTAATTATATGGCTATAGCGGATAATAAGCAAAGGCTAATGGCTCTTCCAGATGACCGGTTACCGACAAGAGGAAGAACACTTGTTCCACCTGAAGCTGTATTGCTTGTTGATCCTATTGAACCACAGTTCAAGGGAGAGGGATATCAATTTTGGACTCAAACCAATAAAAGAGGCTTTTTCTCTATCAACAATATACACAGTGGGAATTACAATCTTTATGCTTGGATCCCTGGTTTCATTGGAGATTATTGTAACAATGTTGTCCTCACCATCAAGCCAGGTTTTATTTTTTGA 705 0.3816 MSSQAVKLRADDNYVVMDNGILEVYFSKKGGFITAIQYNGVDNLLEVLNEADDRGVMGTSYEVIVQNDEKLEISFTKTWDRSSMEEKQSPLNIDIRYVMLRNSSGLYCYSIFEHRKEWPAFNVPQIRMVFKLRKDKFNYMAIADNKQRLMALPDDRLPTRGRTLVPPEAVLLVDPIEPQFKGEGYQFWTQTNKRGFFSINNIHSGNYNLYAWIPGFIGDYCNNVVLTIKPGFIF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03332 234 Pfam Rhamnogalacturonate lyase family 4 55 IPR010325 -
Aip07g03332 234 Pfam Rhamnogalacturonate lyase family 56 183 IPR010325 -
Aip07g03332 234 SUPERFAMILY Starch-binding domain-like 183 225 IPR013784 GO:0030246
Aip07g03332 234 Gene3D - 165 229 - -
Aip07g03332 234 PANTHER LG27/30-LIKE GENE 55 183 - -
Aip07g03332 234 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 55 183 - -
Aip07g03332 234 CDD RGL4_M 179 231 IPR029413 -
Aip07g03332 234 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 184 232 - -
Aip07g03332 234 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 56 - -
Aip07g03332 234 Pfam Polysaccharide lyase family 4, domain II 168 225 IPR029413 -
Aip07g03332 234 PANTHER LG27/30-LIKE GENE 1 56 - -
Aip07g03332 234 PANTHER LG27/30-LIKE GENE 184 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03332 Aip-Chr7 122607035 122616016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03332 185 231 Polysaccharide Lyase AT1G09890 63.830 7.08e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03332 K18195 - gmx:100789751 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03332 07 122607035 122616016 Aip07g03332 07 122607035 122616016 ECH