LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip07g03303	ATGGCCTACACAGGTTCAATGCAGTTGCCTCGTGAAATTAGGCTACACAGTAATAGTGGGATCTGTAGTTTCCATAATAATCCAATAGGTATTGGGCGATTACATTTGGTTACCATAAATATTTCACCACGCAGTTGGAAGCAGAATTCTTCAGCACGCCATCTTTTCAATAAAGTACACGCCCCAATAAGACATGTGCCTTCCAGATGTAAAGTTTTCATATGTAGGTCTGTCCTAATACCAGGTGGAGGGAGTGGGACTCCACTCATGAAATCTGCTGCTGTATTTTTAACAAGGTCGCAGGAGACTTTAAGTGGGAACCCTGTTTTGCTTCGATTGATCCCAGCACTTGGTATCATTGCCTTTGCTGTTTGTGGCCTTGAACCACTCATACGTCTTGGCAGAGTTCTTATTCTTCAAAGACCTGACAGTACTTGGAAGAAAAGTAGCTCCAGATATATCATGACATCTTACTTCCAGCCCTTGCTATTGTGGACTGGGGCAATGCTCATATGCAGGGCACTAGATCCACTTGTCCTACCATCTGAGGCTAGCCAGGCTGTGAAGCAACGGATGCTGAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGCTTTATTCAACAAGCACAAAAATTCTTTATGGAGGCAAATGACTCCAGTGATTCAAGAAATGTATCTGTATATACTGCTGTATGGGTTGCTGCAGTGTCACTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAGGTGGTTAACTGCTGGTGGTTTGGGCACAGTATTGCTCACTCTTGCAGGTCGCGAGATATTCACAAACTTCTTGTCGAGTATAATGATCCATGCAACTCGGCCGTTTATTATGAATGAGTGGATTCAAACGAAGATTGAAGGATATGAGGTTTCTGGTACAGTTGAGCATGTAGGATGGTGGTCACCAACAATTGTGAGAGGTGATGATCGGGAAGCAGTTCATATTCCCAATCATAAGTTCACTGTAAATGTTGTGAGAAATCTGACTCAGAAATCCCATTGGCGCATCAAGAGCTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATAATATTGTAGCTGATATGCGGAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAACAAAAGTTGCATAGAAGGGTGTTTCTGGAGAATGTCAATCCGGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTGAAAACTTCACATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATTCTCTTGGATCTTCTTAGAGTTGTCACTCACCATCGAGCTCGGCTAGCCACTCCCATCCGTACAGTTCAGAAAATATACAGTGAGGCTGACTCGGAAAATATACCTTTTGGGGACACTATTTTCACTCGATCCAGAGCAGCAGGAAATCGCCCATACCTCCTTATAGAACCGCCATATAAAGTTAATGGTGAGGATAAACCTAAACCTTCAGCTCGTTCGACTCGTCCAAATGAGGAAAAAGATGCCAAAGTTGATGAAACCTTGATGTCTGACCCCAAAGGAGATGAGAATTCAGTGGTGACATCAACCACCTCACCTGGTGTAAGCTCCAAGGATAAATCCAAGACAGCTTCTGAAGCCCAGAGTCAGAATCTGGGTTCTAATGGTTCAGTTGAGAAGACCTCCAAAACCTTGCAGCCCAAAAAGGAAAATGCAAATGCAGGAAAGGGAGCAACAGTTCCCCTATCGAAAAACCTTGCACAAAGTGCTGTGCCCGAAACTTCTCCGGTGACTTCACATGAGTCTAGCAAAGGAGAGACAACTTCTGCTAGTCCTTCACCGTTGAAGCAAGATGAAGAGAAATCTGCTGTGTCCTCACCTTCAATTAGGCCTTCCTTGGAAGATAATATCCTCCTTGGTGTTGCTCTCGAAGGTTCAAAACGAACTCTACCGATCGAGGAAGAAATGACTCCCCTTCCTATCCCTGGAGAGTCGCAAGAATTTGCTGTCCAAAGGAATGGGAGTGGACCTCCTGCTACCAAGGATAAGAAGGATCCTAAGCAGAATGATTAG	2073	0.4337	MAYTGSMQLPREIRLHSNSGICSFHNNPIGIGRLHLVTINISPRSWKQNSSARHLFNKVHAPIRHVPSRCKVFICRSVLIPGGGSGTPLMKSAAVFLTRSQETLSGNPVLLRLIPALGIIAFAVCGLEPLIRLGRVLILQRPDSTWKKSSSRYIMTSYFQPLLLWTGAMLICRALDPLVLPSEASQAVKQRMLNFVRSLSTVISFAYCLSSFIQQAQKFFMEANDSSDSRNVSVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIMNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYIAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVTHHRARLATPIRTVQKIYSEADSENIPFGDTIFTRSRAAGNRPYLLIEPPYKVNGEDKPKPSARSTRPNEEKDAKVDETLMSDPKGDENSVVTSTTSPGVSSKDKSKTASEAQSQNLGSNGSVEKTSKTLQPKKENANAGKGATVPLSKNLAQSAVPETSPVTSHESSKGETTSASPSPLKQDEEKSAVSSPSIRPSLEDNILLGVALEGSKRTLPIEEEMTPLPIPGESQEFAVQRNGSGPPATKDKKDPKQND	690

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip07g03303	690	MobiDBLite	consensus disorder prediction	582	632	-	-
Aip07g03303	690	MobiDBLite	consensus disorder prediction	521	562	-	-
Aip07g03303	690	Gene3D	-	291	346	IPR023408	-
Aip07g03303	690	MobiDBLite	consensus disorder prediction	488	519	-	-
Aip07g03303	690	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC	1	688	-	-
Aip07g03303	690	PANTHER	OW CONDUCTANCE MECHANOSENSITIVE CHANNEL	1	688	IPR045042	-
Aip07g03303	690	MobiDBLite	consensus disorder prediction	484	690	-	-
Aip07g03303	690	SUPERFAMILY	Sm-like ribonucleoproteins	275	345	IPR010920	-
Aip07g03303	690	Gene3D	-	196	289	-	-
Aip07g03303	690	Pfam	Mechanosensitive ion channel	235	439	IPR006685	GO:0016020\|GO:0055085

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip07g03303	Aip-Chr7	122122621	122128734	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip07g03303	1	670	Mechanosensitive Ion Channel Family	AT1G58200	52.754	0.0	714

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip07g03303	K22047		-	gmx:100796022	1077.39

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip07g03303	07	122122621	122128734	Aip07g03303	07	122122621	122128734	ECH

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