Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03295 ATGGCTTCTTCTTCTTTTGCAACTTTCAACCTTTCATTCTTCTCGTTTTTAATAACATTCACTTTTCTTCTACTTGCTAACCTCAGCACTGTTGCATATGCAGTGGCTAATCAAACTAGAGAAACGCCGCCGCCGCCACCGCCACCACCGCCGCTGGATTCCCAAAGAACTTCATCCGCCTTCAAGCCAGGCATGGCGGTGGTAGTTGGCATATTAACCACCATGTTCTCTCTCACCTTTCTCCTCCTCCTCTACATCAAGCACTGCAACGGCGGCGCCACCGACTCCACCGGAGCTACCGGAACCCGCTACAATTACACCTCACGCGCGGCAACATTCGCCGGAAGAAAAAACTCCGGCATCGACCGTTCCATAGTGGAATCGCTTCCAATCTTCAGATTCGGATCCCTCCGGGGACAGAAAGAAGGACTCGATTGCGCGATTTGTCTCGCAAAATTCGAGTCCTCTGAAGTCCTCCGGCTCCTCCCGAAGTGCAAGCACGCGTTCCACGTGGAGTGCGTGGACACGTGGCTTGACGCGCACTCCACGTGTCCTTTGTGCCGGCATCGAGTGGATCCGGAGGACATTCTTCTGGTGGAAGATAACAATGCAGCCGCACCGGTGCACCCTCAGAGCGAGAACGAAGCGTGTTCGGAGAGGTACGAAACACGGCGAGTCTCCGGAAGGCACTCGTGGGTTGGTGAGAAAGAAGGAGGGTTCTTGGAGATCATTGTTGAGAACGAGAACGAAACAGAACGACGAAACGCAGCGCCAACGTCGTCGTTTAGGAGGTCGCTTGATAGTGCCACGTGTGCAACGACATCGAAATCGAATAATAATAATAACAAGAAGTGGTTAATGCGTCCAAGAAAAGACGGGATGCTGTTGGTGAAAACGACGACGCATCAGGAAGCGGAGAAAGAGAAAGAAAGGAGGAGCACCGGTGCGGAACGGAGGTTGGAGCACAGGATAATTGTCTCTCCTACCCCTAAACAATGCGGTTACGATTATAATGGTTTGTTGCGAGGGCAGTTACAACGGTGGAGCGATGTTCAGCCGTCGGATCTACTTTACCTGACATCGGAGATGATAATAAGTAAGCATAATAACGGTAGTGGTGCTGAAATCGGGGGCAATTTGGTAATTAACACGAGGAGTATGTCTGAGATAACGGGATTGAGCAGGTTTGTGAGGAACGGTAACGGTAACGGTAGTAAGTAG 1221 0.5119 MASSSFATFNLSFFSFLITFTFLLLANLSTVAYAVANQTRETPPPPPPPPPLDSQRTSSAFKPGMAVVVGILTTMFSLTFLLLLYIKHCNGGATDSTGATGTRYNYTSRAATFAGRKNSGIDRSIVESLPIFRFGSLRGQKEGLDCAICLAKFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRHRVDPEDILLVEDNNAAAPVHPQSENEACSERYETRRVSGRHSWVGEKEGGFLEIIVENENETERRNAAPTSSFRRSLDSATCATTSKSNNNNNKKWLMRPRKDGMLLVKTTTHQEAEKEKERRSTGAERRLEHRIIVSPTPKQCGYDYNGLLRGQLQRWSDVQPSDLLYLTSEMIISKHNNGSGAEIGGNLVINTRSMSEITGLSRFVRNGNGNGSK 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03295 406 CDD RING-H2_EL5_like 145 188 - -
Aip07g03295 406 Pfam Ring finger domain 145 188 IPR001841 -
Aip07g03295 406 SUPERFAMILY RING/U-box 129 193 - -
Aip07g03295 406 MobiDBLite consensus disorder prediction 251 284 - -
Aip07g03295 406 MobiDBLite consensus disorder prediction 254 284 - -
Aip07g03295 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 195 IPR013083 -
Aip07g03295 406 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 37 401 - -
Aip07g03295 406 SMART ring_2 146 187 IPR001841 -
Aip07g03295 406 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Aip07g03295 406 MobiDBLite consensus disorder prediction 40 54 - -
Aip07g03295 406 MobiDBLite consensus disorder prediction 38 57 - -
Aip07g03295 406 PANTHER RING-H2 FINGER PROTEIN ATL43 37 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03295 Aip-Chr7 121989793 121991582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03295 58 400 C3H Transcription Factor Family AT5G05810 47.238 2.06e-79 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03295 K19041 - twl:119999828 298.13