Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03250 ATGGTCCATGGCCTTCTCGCCGCGATGCTGCTCCTCCTCCACCTCCTCCTTCCCCCGCCTCATACCGCCGCGCAGGCCGTTAACTCGCTGCCGCCTCCGCCGCCAGATGCCATCTCCAAGGTGAAGTTCGACAAGTCCATGGCCGTCGTCCTGGTCATCCTCGTCATCGTGTTCTTCGCCCTCGGCTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGTAGGATGAGGGCGAGGTTCGACCTCACGTTCCCCCTCGCCGGAAGCCACCGCCGGCAGCGTGGTTTGGACCGGGAGATCATCGAGACGTTCCCGACGTTTGTTTACTCCGCCGTGAAGACACAGAAGATAGGTCGTGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTCAACGACGACGAAACGCTGCGTTTAATTCCAAAGTGCAGCCACGTGTTCCACCCTGATTGCATTGACGCATGGCTCGCTAACCACTCTACCTGCCCGGTTTGCCGCGCCAACCTCTTCCCCTCCGACAACAACAATAACGATAACGGCACCTTCGTTGACGTTCAGATCCCCGATCCTGAGTCCAACGGTTCACATAGATCCGAAATTGCACAGATTAATAACGGTAACGATAACGGCGGAGGAGGAACGGCAACGGTAACGGAGTCTCCGAAGATGGATAGTTCAGTTAATCAGAGGCGTACGCCGTTACGGTCATGGTCAACGGGGTTTAGGATTGGGAGTTTGTTTCCAAGGTCGCACTCGACGGGTCACTCGCTGGTCCAACCGGGGGAAAGCTTGGAGCGGTTTACGCTGAGGCTGCCGGAGGAGGTGCGAAACCGGCTGCTTATGAGTTCGACGCCATGTCAGACGACAAGCAACGGCGGCGCGGCGTTCTCGAGAGAGAGCAGCGTGAGGAGAGGGTTTAGAACCCGGAGTGTGGGTCCCGGGAGGGGCTACTTGCAGTATGAACGGTTTGGCGGGGTGGAGCGGCGAGGGTTCAATTGGACGCCACCGTTTTTTAGTAGGGCCAGTTCTACCCGGTCTCCGGGGAACGGTACGACGGCGGAGGAGAAGAAGGAGGTGGCGGTGGAAATTGGTGAACGGTCTTCGGATCGGTTATTTGCAGGTGGTGAGAGTTAG 1134 0.5864 MVHGLLAAMLLLLHLLLPPPHTAAQAVNSLPPPPPDAISKVKFDKSMAVVLVILVIVFFALGFLSVYTRQCAERRMRARFDLTFPLAGSHRRQRGLDREIIETFPTFVYSAVKTQKIGRATLECAVCLNEFNDDETLRLIPKCSHVFHPDCIDAWLANHSTCPVCRANLFPSDNNNNDNGTFVDVQIPDPESNGSHRSEIAQINNGNDNGGGGTATVTESPKMDSSVNQRRTPLRSWSTGFRIGSLFPRSHSTGHSLVQPGESLERFTLRLPEEVRNRLLMSSTPCQTTSNGGAAFSRESSVRRGFRTRSVGPGRGYLQYERFGGVERRGFNWTPPFFSRASSTRSPGNGTTAEEKKEVAVEIGERSSDRLFAGGES 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03250 377 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Aip07g03250 377 SUPERFAMILY RING/U-box 118 178 - -
Aip07g03250 377 SMART ring_2 124 165 IPR001841 -
Aip07g03250 377 PANTHER RING FINGER DOMAIN-CONTAINING 9 292 - -
Aip07g03250 377 MobiDBLite consensus disorder prediction 338 377 - -
Aip07g03250 377 MobiDBLite consensus disorder prediction 351 377 - -
Aip07g03250 377 Pfam Ring finger domain 123 166 IPR001841 -
Aip07g03250 377 PANTHER RING-H2 FINGER PROTEIN ATL11 9 292 - -
Aip07g03250 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 171 IPR013083 -
Aip07g03250 377 MobiDBLite consensus disorder prediction 201 231 - -
Aip07g03250 377 CDD RING-H2_PA-TM-RING 123 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03250 Aip-Chr7 121194038 121196125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03250 3 305 Rapid Response to Elicitors AT3G05200 40.994 3.64e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03250 K10664 - gmx:100815982 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03250 07 121194038 121196125 Aip07g03250 07 121194038 121196125 ECH