Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03249 ATGGCACTAGAGGCTGTGGTTTTTCCACAAGATCCATTATTCTCATATGCTTCTTCTACCACCACCACCAAGGATTATTTCTACTCATCCTTTCTCGGCAGCCACCACCACGATCTCATCGGAATTATAAACAACAACATCATTCAACAAAACCAAGCAACTAACAATTCCGACTCTTCTTCTCCTCCTTCCAACAACGACCACTGGGATCATTCTCACTACGCCACTTCTTCCAGCTCCCCTGACTGCTGCGCTGCCACTGTTGATCAACCTTCTGTCCCCACCACCACTGGCCGCCGCAAACGCCGCCGCACCAAAACCACCAAGAACAAGGAGGACATCGAGAACCAGAGGATGACTCACATTGCTGTTGAACGCAACCGCCGCAAACAGATGAACGACTACCTCGCCGTCCTTCGTTCTTTGATGCCTCCTTCTTATGTTCAAAGAGGTGACCAAGCGTCTATTATTGGAGGCGCCATTAACTTTGTGAAGGAGCTAGAGCAGCTTTTGCAGTCCATGGAGGGTCAAAAGAAACCCAACCACCACGACACTACTGCTGCTGGTGGCGCCGCCGGAATGAATAGTAGTGGCCAATCATCGCCGTTTGGCGAATTCTTCGCGTTTCCGCAGTACACAACGCGTGGTCATCATCAGGGAAACAACAACGCAACGACGATGGCAGCGGAGCAGCAACAGAAACAGTGGGCGCCGGCGGTGGCGGACATAGAAGTGACAATGGTGGACAGCCATGCGAACCTCAAGATTCTATCAAAGAAACGACATGGGCAGCTGATGAAGATGGTTGTTGGTCTCCAATCTCTAAGCCTCACCATTCTCCACCTTAATGTTACCACTCTCCATGACTTCGTGATCGCTCTAACTTTTGTAGCTAATTTTGAGGATGGGTGCCAGCTGAATACGGTGGATGAAATAGCTGCTGCTGTGAATCAACTATTATGCGCAGTTCAACAAGAGGCATCATCTTTCAACGAAATTAATTAG 1005 0.4925 MALEAVVFPQDPLFSYASSTTTTKDYFYSSFLGSHHHDLIGIINNNIIQQNQATNNSDSSSPPSNNDHWDHSHYATSSSSPDCCAATVDQPSVPTTTGRRKRRRTKTTKNKEDIENQRMTHIAVERNRRKQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKKPNHHDTTAAGGAAGMNSSGQSSPFGEFFAFPQYTTRGHHQGNNNATTMAAEQQQKQWAPAVADIEVTMVDSHANLKILSKKRHGQLMKMVVGLQSLSLTILHLNVTTLHDFVIALTFVANFEDGCQLNTVDEIAAAVNQLLCAVQQEASSFNEIN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03249 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983
Aip07g03249 334 CDD bHLH_AtFAMA_like 119 187 - -
Aip07g03249 334 PANTHER MAX DIMERIZATION, MAD 1 328 - -
Aip07g03249 334 Gene3D - 104 183 IPR036638 GO:0046983
Aip07g03249 334 MobiDBLite consensus disorder prediction 52 95 - -
Aip07g03249 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 183 IPR036638 GO:0046983
Aip07g03249 334 MobiDBLite consensus disorder prediction 175 198 - -
Aip07g03249 334 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 328 - -
Aip07g03249 334 MobiDBLite consensus disorder prediction 52 113 - -
Aip07g03249 334 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983
Aip07g03249 334 SMART finulus 122 173 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03249 Aip-Chr7 121141759 121143597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03249 1 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.155 9.53e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip07g03249 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03249 - - gmx:100789380 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03249 07 121141759 121143597 Aip07g03249 07 121141759 121143597 ECH