Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03200 ATGGCCTACGTGGGTGATGCTGAGTTCCTTATGTTCCATGTGCTAGAGGTGAATGCGCGCCTCCCAGATGCCGGAGTTTCACCCGTGTATCCTTTAGCCGTACATGAACTATTAGGGAATGCTTGTAGCAATCTTGCTGCTTATTTTGTGCCCGCTTTGTCTCAGGACGAGGATTTCTTGCTACCACATTCAATCCACTCTAATTTGCCATCAGTAATATATCCCATGGGTGATACATACACCATCCAGTTCGCCTCGACCATACAAAATCTGCCCATGCTTTCGTTGCTTCTGGATATTTATTTCACTTTTGCTACTGATTATGATGCCAAACCCCTTGACTATCGCGCCTTTGCTTCAATGCTTGGCCATTACTCAAATTTCTGCCCCGGAGCACTTCACAGCTTGCTCCCAAACCGTGAGGCTGTTGTTGTCGACAAACTGATTTCAAAATACCAAGCTGCCGAGTATATTTTGACCCTCCCAATCAGTTTTGTTCAAAGGGCCTTTGGGATTAAACCTGATCAAGTCGACGTTGTCGATGATGCTGGTGTGTGTTACAAGGTCCACATTCGCTCGAAGCCAAGTTGGCCTCGAGAGTGCTATTTCGCTAAGCGGTGGAGGCCTTTTAGTCAGCACCACATGCTGCGTACCGGAAGTGCCATTAGGCTAATGGTTTATTCCTTTAAGAACTGGCGTGTGCATTGTCATGTCCTATTTACTCAGCTGCTGAACTCATATTTTCTTCTTGTGCTTCTTCGAGACCCAAATCCAATCCACCAAATGGATCAGAAATTTGATTCTGTGAAAGACCTTTCTCTCATTTCAGAGAAGAACTGGTGCATTAAAGTAAGAATTTTGAGGATGTGGAAGGTTCCGTCATATGAAAAGAGTTACTCGCAACCTTCAATGGAGTTGGTTGTAATTGACAAAGATGGAACTCGGATCCATTGTTTCATCCGGTCTATCCATTACCGGCTTTTTGAACCTATCCTTGAGGAGGGAAAGGTGTTTGTTGTGGGCAACTTCACAATGGACTCAAACACACAGAAATACAGACCCACCAAGCATAGCATGCAGATCATATTTAAGAGGGACACATTGGTCTCCGGTGCTGATGGCATGGATATTCCAATTGAGTCATTTGATTTCGTGGCAACCAAGGAAATCTTATTGGAAAATTATGCGTCTGAATTGGTAACTCTTCTTGATGCCAACAAGGCCACTGAATTTATAATTGTGCTCCAATTTGCCAAGATGAAGTTCTACAATGATGTTATGACTATAACCAACACAAACTACACCACAAGGCTCATGGTTAATGCTGACCTTGAAGTGGTTAAGAAATTCCGTCAAAAGCTGATTCGACTTGGTAGCAAGCACAGCACCAGCGTTGAAGTTATAAGCCGGGTAGTGAGGCATTCTCCATCTGAAGATTTTCTCAGCCTTACCCCTTATGCTACCATACATCAAATAAAGGAAACTCTTAAGAAATCAACCTTTGTGACATTTGGAACGGTCATTGACATTGACAGGGATCATGCATGGTGGTACAAGGCTTGCAGGCAATGCACACAGGGACTGGAGGCACTTACTGACCAATTTTATTGTGCAAAATGTGATGTTTACTCTACAGTTTTTGCCCCCAGGTTCTGCATTCAGGTTCGTGTTGGTGATGACTCAGATACCGCAACTTTTGTTCTATTTGAGAATTGTGCATCAAAGTTCTTAGGCCTAACTGCCGCTGAGATCCGCACCAGATTGCTTGCTAGGGGATATGGAAGAGAGCATTTCCCAGATGAGCTTAATGCACTGATTGGGAGGACACTTCTATTCAAGCTTACTGTTAGGCATGATAGCTTAAATAAATTTCAGCTGTGCGTGATTACCGTTTCAAGAATATGTTCTGACCCAGAGATTATCTCCTCACTTGCTTTAGACAAGAACATTAAATTGGATGCACTGCAGAATTTGACCAAGGGTGCGGTTGTTCGAAGCGGTGACTTGGTTGGGTCTGGGAGCATACTCGGTATCCCTGGTTCAACCACCACTCCGAGTCCGAATTCTGCTGCAGTTCCTGGTCACGGGGCTGGCCACGTGGTTACATATACTCCTGTTAAGCGGGTTTGCATTAGATCCGGTGACGACTTCTCATCACATGCCACACCCTCTGCCTCCAAGAGTCTTCTCCCTGCGTTTGAGAGCTGCGTCCCAAGGAATGCCACCGACCCTGATGCAGGGGACATATGA 2250 0.4498 MAYVGDAEFLMFHVLEVNARLPDAGVSPVYPLAVHELLGNACSNLAAYFVPALSQDEDFLLPHSIHSNLPSVIYPMGDTYTIQFASTIQNLPMLSLLLDIYFTFATDYDAKPLDYRAFASMLGHYSNFCPGALHSLLPNREAVVVDKLISKYQAAEYILTLPISFVQRAFGIKPDQVDVVDDAGVCYKVHIRSKPSWPRECYFAKRWRPFSQHHMLRTGSAIRLMVYSFKNWRVHCHVLFTQLLNSYFLLVLLRDPNPIHQMDQKFDSVKDLSLISEKNWCIKVRILRMWKVPSYEKSYSQPSMELVVIDKDGTRIHCFIRSIHYRLFEPILEEGKVFVVGNFTMDSNTQKYRPTKHSMQIIFKRDTLVSGADGMDIPIESFDFVATKEILLENYASELVTLLDANKATEFIIVLQFAKMKFYNDVMTITNTNYTTRLMVNADLEVVKKFRQKLIRLGSKHSTSVEVISRVVRHSPSEDFLSLTPYATIHQIKETLKKSTFVTFGTVIDIDRDHAWWYKACRQCTQGLEALTDQFYCAKCDVYSTVFAPRFCIQVRVGDDSDTATFVLFENCASKFLGLTAAEIRTRLLARGYGREHFPDELNALIGRTLLFKLTVRHDSLNKFQLCVITVSRICSDPEIISSLALDKNIKLDALQNLTKGAVVRSGDLVGSGSILGIPGSTTTPSPNSAAVPGHGAGHVVTYTPVKRVCIRSGDDFSSHATPSASKSLLPAFESCVPRNATDPDAGDI 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03200 749 Pfam Replication factor-A C terminal domain 503 634 IPR013955 -
Aip07g03200 749 Gene3D - 264 371 IPR012340 -
Aip07g03200 749 CDD RPA1_DBD_C 489 651 IPR013955 -
Aip07g03200 749 SUPERFAMILY Nucleic acid-binding proteins 265 370 IPR012340 -
Aip07g03200 749 SUPERFAMILY Nucleic acid-binding proteins 484 634 IPR012340 -
Aip07g03200 749 PANTHER REPLICATION FACTOR A 1, RFA1 281 579 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip07g03200 749 SUPERFAMILY DNA-binding pseudobarrel domain 157 238 IPR015300 -
Aip07g03200 749 Pfam Domain of unknown function DUF223 305 397 IPR003871 -
Aip07g03200 749 CDD RPA1_DBD_A_like 281 369 - -
Aip07g03200 749 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 281 579 - -
Aip07g03200 749 Gene3D - 481 640 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03200 Aip-Chr7 120225005 120231353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03200 501 631 Core DNA Replication Machinery Family AT5G08020 25.758 6.91e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03200 - - adu:107458794 1047.34