Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03198 ATGGCAGCAATGATGGATTTCTACAGCAACACACAGCTTCAGTACTCAGATCCCTTTAGAGGTAGTGAGTTAATGGAAGTTCTTGAACCTTTTATTAAGAGTTCTTCCACAACACCCTCACCTTCACCTTCAACTTCTCCTTCTCCTCCTTCTTCAACTTCATCTCCTTCTACCTCTTACCCTTCTTCTTTCTACTTCCAATCTTCTTCTCCTTCTCCTTTTCTCCCTCCCCAACAACCCTGTTTCTTGTCCAACGGTTTACCCATGACCCAAAACTTGTTGGGATTCGGGACACAACCAACTTCAACTGCTTCAACAACTTCTCTTCTTGGACTGAACCACCTAACCCCGTCACAGATCAATCAGATCCAGGCCCAAATGCAGATCGAGGCCCAACCATGGCAAACACAACACCTCAACTCCTGTGTTAGCTTCCTTGGGCCGAAGCCCATCCCGATGAAGCACGTGGGGTCAACAGCTTCAAAGCCCACGAAGCTTTACAGAGGGGTGAGGCAGAGGCACTGGGGAAAGTGGGTGGCTGAGATCAGACTCCCCAAGAACCGTACAAGGCTCTGGCTCGGAACCTTCGACACCGCAGAAGAGGCTGCTTTGGCTTACGACAAAGCCGCTTACAAGCTCCGCGGCGACTTTGCCAGACTCAACTTCCCTAACCTCCGTCACAACGGCTCCTCCGTCGGCGGTGAATTCGGCGAGTACAAGCCGCTACACTCCTCTGTCGACGCAAAGCTTCAGGCCATATGCGAAGGCCTCGCCGAGATGCAGAAGCAGGGAAAGACGGAGAAGACGAAGCGGTCCAAAGCAGGCGCTGCTGGTTCCAAAGCTGCGGTTTCTAAGCCGGCGGCGGAGGACGTGAAGGCTTGTTGCAAGGTGGAAGAAGCCGCAGCGTCGCCGCCCCCCGAGAGCGATGGTGGTTCGTCGGAGGATTCTTCGCCGCTGTCAGATCTGACGTTTGGTGATGTTGATGACGTTGGGGATAATTTTAATCTTCAGAAGTTCCCTTCGTATGAGATTGATTGGGATTCTCTGTGA 1050 0.5229 MAAMMDFYSNTQLQYSDPFRGSELMEVLEPFIKSSSTTPSPSPSTSPSPPSSTSSPSTSYPSSFYFQSSSPSPFLPPQQPCFLSNGLPMTQNLLGFGTQPTSTASTTSLLGLNHLTPSQINQIQAQMQIEAQPWQTQHLNSCVSFLGPKPIPMKHVGSTASKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSSVGGEFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKTKRSKAGAAGSKAAVSKPAAEDVKACCKVEEAAASPPPESDGGSSEDSSPLSDLTFGDVDDVGDNFNLQKFPSYEIDWDSL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03198 349 SMART rav1_2 166 229 IPR001471 GO:0003700|GO:0006355
Aip07g03198 349 CDD AP2 165 225 IPR001471 GO:0003700|GO:0006355
Aip07g03198 349 Pfam AP2 domain 167 215 IPR001471 GO:0003700|GO:0006355
Aip07g03198 349 MobiDBLite consensus disorder prediction 30 64 - -
Aip07g03198 349 MobiDBLite consensus disorder prediction 262 326 - -
Aip07g03198 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 348 - -
Aip07g03198 349 Gene3D AP2/ERF domain 166 224 IPR036955 GO:0003700|GO:0006355
Aip07g03198 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 348 - -
Aip07g03198 349 SUPERFAMILY DNA-binding domain 166 224 IPR016177 GO:0003677
Aip07g03198 349 ProSiteProfiles AP2/ERF domain profile. 166 223 IPR001471 GO:0003700|GO:0006355
Aip07g03198 349 PRINTS Ethylene responsive element binding protein signature 167 178 IPR001471 GO:0003700|GO:0006355
Aip07g03198 349 PRINTS Ethylene responsive element binding protein signature 189 205 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03198 Aip-Chr7 120194466 120196432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03198 1 349 AP2-EREBP Transcription Factor Family AT1G78080 51.366 4.17e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip07g03198 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03198 K09286 - gmx:100800478 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03198 07 120194466 120196432 Aip07g03198 07 120194466 120196432 ECH