Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03182 ATGGGGCGTGTGAAATTGGAGATAAAAAGAATAGAGAATACCACAAATCGACAAGTTACATTCTCAAAACGTAGAAATGGTCTCATCAAGAAAGCATATGAGTTATCCATCCTTTGTGACATTGATATTGCACTTATCATGTTCTCTCCCTCTGGTCGTCTCAACCATTTCTCTGGCAAAAGGAGGGGAATTCAGAACAAAGAGTATTTGCTCCGGACCCTTCAACAATTGAGGAATGAGAATGACATAGCTCTTCAACTAGCCAATCCGGGAGTCATTAACTCTGAGATTGAAGAACTCCAACAAGAAGTTAGTAGGCTACATCAACAACTTCAACTGGCTGAAGACCAGATAAGGGCTTATGAACCCGATCCATTAAAGATGACATCTATGGAGGAGCTGGAATCTGGTGAAAAGAATCTTGTGGAGACTTTGACTCGCGTCATGCAAAGAAAGGAATATCTATTGAGCAGCCATTTGCCTACTTATGATCCATCAACTATTCAGGGGATGGCATCAACTTTTGAGAATGTCGGATGGTTGCAAAATGGTACCCAAAACCACAACCAAATATTTGATGCATCTACTCCTTTGGATCCACTCAGGGATTTGCAATCGTCAATTTATGATCCATTTCCACAAGGAACAAATTCACAAAGCGATACAAGAAACATTGGAGAGTGTCACGTGACAAATCAGAATGACACGTGGCCTCAAGGATACACGTTATACTCTCATATGCAGCATGAGATGGTGGGACCTGACGTGTCGAATATGATGACGACACATGGACAAATGAATCTTCCAATCACAGCCTCTAATTTGCAACCATCCAACAATGAAGCCGGAGAATATGACTGCCCAACTGCTACCATTCTCTCTGATGGCGTCATCGTCATCTGTGGCATCACTACACGCCACCATTGCCTCTCCTCTCTAAGTCCTACATGGTCTCTTTCATCGGCGGTGACCTTCTTTTGCTACTTCACCGTCGTATTTCAATCCTTTTCCGCCATGATGTGCATGACAATAGCCTTCTCTGTTTGCGTCTCATTCTTATGTTCCCAAGAGAAAGCCGCCGCTTGGTGCCCTAGCCGCGATTGGACGTCCGCGACGGAACCCACAAAATCAGAGATTTTCGCCCTTCCCTGTTGCTGCTCCATGAAGGTAAATAGAAGTTATTTCGTCTTTTTTGCTCCGCTTCTCCTTCATGACGGTGCCGTCCTCGGTGCTATTCCTGGCCATTTGTCACGCGACCTGGTTCTCGAAGGGGTTCTATCGTCTGATTCTTCAGCTGAGTCTATTCTATGCCACCTACAACCGCCTTCCTCCAGCAAGCTTTATTTTGCATCTAGGGAGAGGTCGATACTAGATCTAGAAGCTCCGATAGTAGATGTAGAGTTTTTATTTCTAAAATTTTTTGAATGA 1428 0.4405 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLNHFSGKRRGIQNKEYLLRTLQQLRNENDIALQLANPGVINSEIEELQQEVSRLHQQLQLAEDQIRAYEPDPLKMTSMEELESGEKNLVETLTRVMQRKEYLLSSHLPTYDPSTIQGMASTFENVGWLQNGTQNHNQIFDASTPLDPLRDLQSSIYDPFPQGTNSQSDTRNIGECHVTNQNDTWPQGYTLYSHMQHEMVGPDVSNMMTTHGQMNLPITASNLQPSNNEAGEYDCPTATILSDGVIVICGITTRHHCLSSLSPTWSLSSAVTFFCYFTVVFQSFSAMMCMTIAFSVCVSFLCSQEKAAAWCPSRDWTSATEPTKSEIFALPCCCSMKVNRSYFVFFAPLLLHDGAVLGAIPGHLSRDLVLEGVLSSDSSAESILCHLQPPSSSKLYFASRERSILDLEAPIVDVEFLFLKFFE 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03182 475 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 70 247 - -
Aip07g03182 475 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 63 - -
Aip07g03182 475 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip07g03182 475 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Aip07g03182 475 PANTHER SERUM RESPONSE FACTOR HOMOLOG 70 247 - -
Aip07g03182 475 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 63 - -
Aip07g03182 475 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip07g03182 475 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip07g03182 475 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip07g03182 475 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip07g03182 475 CDD MADS_MEF2_like 2 58 IPR033896 GO:0000977|GO:0045944
Aip07g03182 475 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip07g03182 475 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Aip07g03182 475 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip07g03182 475 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03182 Aip-Chr7 119812723 119818940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03182 1 294 Type I MADS-box Gene Family AT1G22130 51.335 1.71e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip07g03182 K-box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03182 - - adu:107460753 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03182 07 119812723 119818940 Aip07g03182 07 119812723 119818940 ECH