Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03112 ATGTCTGTGAGTCCACCAAGAGAAAGAAGCAACAACAATAACAATGGATTCCAACTATACTGGTGCTTCCAGTGCAACCGCATGGTGCGAGCCGCACACGATAACAACCCATCCTGTCCACGCTGCTTTGGCCAATTCATCCAAGAAATCAACATGCCAACCCCAAGACTCTTTCTCGATTTTACCCCTAACACTAACCACCCTTCTCCACAGCCCCGTCTTCTAGAAGCTCTCTCCCTCATGCTCGATCCCGCCTTCCAACAACCCCGTCGCCGCCCCCGCATCCGCCGCCGCCAACCTTCCGACACACCCGACCCCCACCCTACAACTCGTCCCCGAACCTGGATCATTGTCCATCCCATCGGTGCTTCCCCCGAGGAGCTCGAAGCCATGGTTCCGCCGCCGCGCCGCGACCGTCCGGTGGTGCCGATCGGGGTGGACTCCAGGGACTACTTCCTTGGTCCGGGACTGAACGAGCTGATCGAGCAGATTACCGAGAATGATAGGCCGGGTCCGGCGCCGGCGGCGGAGAGAGCAATCAGAGGGATACCGAGAGTGAAAATAGAAGCACAGCATCTGAAAGAGAATTCTCAGTGTCCGGTTTGTCAGGAAGAGTTTGAGGTTGGTGAAGAAGTGAGGGAGCTTCCATGTAAGCATGTTTATCACTCTGATTGCATTGTTCCGTGGCTGAGGCTTCATAATTCTTGCCCCGTTTGCCGCCATGAGGTGCCCGATGGTGATGATGATGATGAATGTGTTGCTGAGGGGAGGTTTCAGAGGTGCTTGAGGTGGACGAGGGTTTCTTCTCTTTGGCCATTTCATCACCACCGTCGACGTGTTCATCCTGCTGATCCAGGACCAGGAGAGAATAATAACGCTACTGCTTCTCTCAGGGTACCTAATCCAAGACGCTCTTGCACCATTCTTTAA 930 0.5441 MSVSPPRERSNNNNNGFQLYWCFQCNRMVRAAHDNNPSCPRCFGQFIQEINMPTPRLFLDFTPNTNHPSPQPRLLEALSLMLDPAFQQPRRRPRIRRRQPSDTPDPHPTTRPRTWIIVHPIGASPEELEAMVPPPRRDRPVVPIGVDSRDYFLGPGLNELIEQITENDRPGPAPAAERAIRGIPRVKIEAQHLKENSQCPVCQEEFEVGEEVRELPCKHVYHSDCIVPWLRLHNSCPVCRHEVPDGDDDDECVAEGRFQRCLRWTRVSSLWPFHHHRRRVHPADPGPGENNNATASLRVPNPRRSCTIL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03112 309 PANTHER - 12 249 - -
Aip07g03112 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 249 - -
Aip07g03112 309 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
Aip07g03112 309 Pfam zinc-ribbon 18 50 IPR039525 GO:0061630
Aip07g03112 309 MobiDBLite consensus disorder prediction 277 309 - -
Aip07g03112 309 Pfam Ring finger domain 198 240 IPR001841 -
Aip07g03112 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 246 IPR013083 -
Aip07g03112 309 SUPERFAMILY RING/U-box 180 244 - -
Aip07g03112 309 CDD RING-H2_RNF126_like 198 240 - -
Aip07g03112 309 MobiDBLite consensus disorder prediction 289 309 - -
Aip07g03112 309 SMART ring_2 199 239 IPR001841 -
Aip07g03112 309 MobiDBLite consensus disorder prediction 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03112 Aip-Chr7 118798188 118799615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03112 138 251 C3H Transcription Factor Family AT5G01980 42.241 1.28e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03112 K11982 - gmx:100787399 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03112 07 118798188 118799615 Aip07g03112 07 118798188 118799615 ECH