Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03083 ATGGAAGGTGATGATGGAAAACAACCAACCCACAAAGAACCATGCAATAATAATAGTAGTAATAATAATGAATTATTTGAGCAAGAGAACTTTGATTATATTCTTGCAATTAGCTTGCAAGAACAAGAGGGAGCAACATACACAACCCTAGCAACCATGGAAAGTGAGGACGATGAAGAAGACGACGACGAAGATGATTATTCCTCGTTGGGCGATGAAGATGGCGATTCCGAGTATTATTTAGAAAGCCAAGACTTTGAGGAGTCAGAAACCCAGTTCCTTGAAGGTGAAGGAAGCAACTACGACGAAGATGACGAGGGAGAAGAAGAAGAGATGGAAGAAGATGAAATTGATCCAGATGAAATGTCCTATGAAGAGTTGATTGAGTTGGGAGAAATCATAGGAGAAGAGAATAGAGGATTATCAGAAAATGAAGTGTCTTCTTGCTTATACCCTTACACTTGCAAATCTAATAGTGATGATGAAAGAATCGATCGGTGTGTAGTTTGTCAGATAGAATATGAAGAAGGTGAATCAATGGTGGCACTGGAATGTAAGCACCCTTTTCATGAAGATTGCATAACCACATGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTGGCAATGAAGTTTCAACCAATAATAATAATACCAACAAGATCATGCCTAAGAATGAATAA 681 0.3818 MEGDDGKQPTHKEPCNNNSSNNNELFEQENFDYILAISLQEQEGATYTTLATMESEDDEEDDDEDDYSSLGDEDGDSEYYLESQDFEESETQFLEGEGSNYDEDDEGEEEEMEEDEIDPDEMSYEELIELGEIIGEENRGLSENEVSSCLYPYTCKSNSDDERIDRCVVCQIEYEEGESMVALECKHPFHEDCITTWLQIKKVCPICGNEVSTNNNNTNKIMPKNE 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03083 226 ProSiteProfiles Zinc finger RING-type profile. 167 207 IPR001841 -
Aip07g03083 226 SUPERFAMILY RING/U-box 166 214 - -
Aip07g03083 226 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 216 IPR033276 GO:0004842|GO:0016567|GO:0046621
Aip07g03083 226 SMART ring_2 167 207 IPR001841 -
Aip07g03083 226 MobiDBLite consensus disorder prediction 53 121 - -
Aip07g03083 226 Pfam Ring finger domain 166 207 IPR001841 -
Aip07g03083 226 MobiDBLite consensus disorder prediction 46 121 - -
Aip07g03083 226 MobiDBLite consensus disorder prediction 1 26 - -
Aip07g03083 226 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 21 216 - -
Aip07g03083 226 MobiDBLite consensus disorder prediction 12 26 - -
Aip07g03083 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 224 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03083 Aip-Chr7 118177559 118178508 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03083 102 211 C3H Transcription Factor Family AT3G63530 44.643 5.32e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03083 K19045 - gmx:100526881 195.282