Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03050 ATGAGTCTCGTTAGTCTCTCTCTCAAGCTCGAGCTCTGTCACTCACAGTCTCACTCTTATCTTTCATCTCCGGTTTCTCACTTCCGCCTTCCCTACGCTCGCTTCGCCGGCGACAGAAGCAGACAGAACCAGCATCTGGTCCCTTGGGTGGTGGAGGTCGTTGTCTTCTTGTTTTGGCTtgccgccgccgtccgtgctgtcggcgcctccgcgtcctctcttgtagcccaggccctctcttctagctcggcgtcctccttccccctgtccccgtcctccctggcttctctgttcgaggttggagcagctcgccgccgtgtcgccggtcgccgtccgtgtctccgtcgaagAACTGAGAAGGAAAATAGCAATCTGAACCAGCAAAAGGATTTCTGCAGCGTCAGCACGTGCTCACACTCACAGGAACAAGATCTGCCCTCTGACGAAACGCCATGGGTCGAAAAATACCGACCAAAACAAGTGAAAGACGTAGCTCACCAAGAAGAAGTTGTTCGTGTCCTCACCAACACTCTCGAAACTGGAAGCTGCCCCCACATGCTCTTCTATGGACCCCCCGGCACCGGAAAAACAACCACTGCTCTTGCAATAGCTCACCAGCTTTTCGGGCCTGAGCTTTACAAGTCTAGGGTGCTGGAGCTCAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGCACCAAGATAAAGGATTTTGCAGCCGTCGCAGTTGGTACTATTCAGCACAAGGGTGGTTATCCTTGTCCACCATATAAGATTATTGTCTTGGATGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGACGAACGATGGAAACTTACTCTAAAGTTACTCGGTTCTTTTTCATATGCAACTACATCAGCAGGATCATAGAACCACTGGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCATTGTCAGAAGAGATCATGAGCAACCGAATACTGTACATTTGCAATGAAGAAGGACTCAATCTTGATGCTAAGGCTCTTTCAACCCTGAGTTCTATCTCTCAAGGAGATCTTCGTCGGGCTATCACATACTTGCAGTCAGCGGCTCGATTATTTGGATCTTCCATTTCTTCAGAGGACCTGATTTCAGTATCTGGGGTTGTTCCAGCAGAGGTAGTGGAGGCAATTCTGAAAGCATGCAAAAGTGGAAATTTTGATTCAGCCAACAAGGAAGTAAACAATTTCATTGCAGAGGGATATCCAGCCTCTCAGATACTAACTCAGTTATTTGAGGCCATTCTTGAAGATGACATATCAGATGAACAGAAAGCAAGAATCGCCAAGAAGCTGGGAGAAGCAGATAAGTGTCTGGTTGATGGTGCTGATGAATACTTGCAGCTTCTTGACACAGTCAGCACTACAATGCAAGCTTTTTGTAACATGCCGGAAGGATTTGCTTATGGGAGTTAG 1449 0.4072 MSLVSLSLKLELCHSQSHSYLSSPVSHFRLPYARFAGDRSRQNQHLVPWVVEVVVFLFWLAAAVRAVGASASSLVAQALSSSSASSFPLSPSSLASLFEVGAARRRVAGRRPCLRRRTEKENSNLNQQKDFCSVSTCSHSQEQDLPSDETPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTIQHKGGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSNRILYICNEEGLNLDAKALSTLSSISQGDLRRAITYLQSAARLFGSSISSEDLISVSGVVPAEVVEAILKACKSGNFDSANKEVNNFIAEGYPASQILTQLFEAILEDDISDEQKARIAKKLGEADKCLVDGADEYLQLLDTVSTTMQAFCNMPEGFAYGS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03050 482 Gene3D - 317 380 - -
Aip07g03050 482 Gene3D - 381 469 - -
Aip07g03050 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 375 IPR027417 -
Aip07g03050 482 CDD HLD_clamp_RFC 315 374 - -
Aip07g03050 482 Pfam Replication factor C C-terminal domain 382 465 IPR013748 -
Aip07g03050 482 SMART AAA_5 182 315 IPR003593 -
Aip07g03050 482 PANTHER REPLICATION FACTOR C SUBUNIT 4 144 470 - -
Aip07g03050 482 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 144 470 - -
Aip07g03050 482 Gene3D - 145 314 IPR027417 -
Aip07g03050 482 Pfam ATPase family associated with various cellular activities (AAA) 186 313 IPR003959 GO:0005524|GO:0016887
Aip07g03050 482 SUPERFAMILY post-AAA+ oligomerization domain-like 381 465 IPR008921 GO:0003677|GO:0006260
Aip07g03050 482 CDD AAA 167 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03050 Aip-Chr7 117561945 117579597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03050 151 478 Core DNA Replication Machinery Family AT1G21690 79.091 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03050 K10755 - gmx:100798331 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03050 07 117561945 117579597 Aip07g03050 07 117561945 117579597 ECH