Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03003 ATGTTGGAAGGTGAACCGAAAGAAAATGCCACTTCAGTTGTGCCAATCAGTACGGAGACAAGCATTTTGGCTGTTGAAAATGTTCAGGGAGAAAAAATTAATTTACAGGACGTTGGGGGAAATCATCAGAAGAGAGTTTGTGTGCAAAGATCTCCAGATTGTGTCATTCCTAAAACTTCAAAGGACCAGTCCTCCTTTTTTCCCCGATCAAAGCCATTTACTTCATCCCGTTCATTAAAACCTCGAACCTGGCTTCGAACAGGGAACACTCAAAATACTCTTTATACCCGTAAGGGTAACAGTCTTGTTCGGAAAGTTATCCCTGTTTCTGCTACAACATCAACATCCGTTGCTAACCAGTCACCATCTTTGGGCTTTGACAACTTTGAAAAGAGCATCAGATCTGAATGCATGGTTAATGTTCCAGCCGATCCTAAGAATGTTAGAGAAACTAATGATGCCGCAAAATCTTATGAGGAATTGTGCAAATATTCTGAAACATACGAAAATCAAATTGGTTCAGACAATCGTGGGGCTGGCCAAGTTGAGATTTCTTCTTCAACTGCAAAGAGAATAGTATATATGAAGCCCAAGTCAAATAAATTAGTTGCATCTTTGGATTCTAGTGATCTCTCTGTCTCTACTGATGGCAAGACTCAAACAGCATACTCCAATGGCTACTACAAGAAGCGCAAAAATCAGATAATAAGGACTTCATTTGTTAGTCATATCAGCCCAACAGTTACAATGCAAGATAGTAATGTAAATTCTGATGGTCCATTGGATTCTAAAGAGATTTGCAGCAGGTTTACAAACAAGTGGTCGCAAAAAGTTGCTGGGAGCTTGTGCAAACCTTTAAAAGCTCCACTTGGTGGGACCCTTTCATCAAAAAACAACACTGGCTCAGGGCATTATCGGAAGATTTTGCCTCACTTTTTTCAATGGAAAAGATCAACATTTCGAAGAAGATTTGTTCACAATCGTGATTTAAGCTCCAACTTTACTCCCTCATCAGCAAACAGCAAGAAATTGCTTCTTTTAAGGAAGAGGGATGCTGTTTACACTAGATCAACCCATGGGTTTTCTCATTGGAAACCTAAGGTATTACATACTGGTGGATCCATTATAAAAGGGTCCAAATTTTCTGGCAGGTACTCTGAGAAGGTTAATGAGGAAGCACTTGCTGTTGCTGTGTTGGAGAGGAAAACAAGAGAACAGAAAGATGTTGCTTGTAACAGTTCTCAGGCAAAAAGCTTGGCTGCCAAAGAAGGTTCCATCCAACAAAGATTAGTGATTGGGGAAAATGTGTATTTCCAAATTGGCAAAGGTAATCAGCTTATTAGGGACCCAAGGAAACGGACTCGGATTTTGGCTAATGAAAAAGTTAGATGGAGTCTGCACACTGCTAGACAGCGCCTTGCACGAAAGCAGAAGTACTGTCAGTTTTTTACCAGATTTGGGAAATGTAACAAGGATGATGGGAAGTGTCCTTATATTCATGATCCCTCAAAAGTAGTTGTCTGCACTAAGTTTCTAAATGGTTTATGTTCTAATGGCAACTGCAAATTGACTCATAAGGTTATTCCGGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGTTTATGCACAAACAGAAGTTGTCCTTACAGACATGTCAATGTGAATCCTAAGGCTTCTATTTGTGGAGAATTTCTCAGGGGCTATTGTGCCGATGGAAATGAGTGTCGGAAGAAGCATAGCTATGTCTGTCCGACCTTTGAAGCAATGGGAAACTGCGAAGAAGGAACCAAATGCAAGCTTCATCACCCGAAGAAACTGAGTAAGGAAAAGAAAAGGAAGAGGTCCAGAGATGAGAATGTTGGTAGACGGCGATACTTTGGCTCCGTTCCCACTGATATCAAAGAAACTGGGTTAATGGTGGCTCAAAGGCAGTGGCAACAGAGTCATGACAAAGACGGAGATGTTGCTGACTATATCGGCTTCGAAGTTGAAGAAAGGGTTGATCAACCATATGAACAGGCAACACCAAGTAACAATGATATTTGGGACTTGCAATTGGACAATCTTGATGAACCAATTAGACCTGTTCTTACATTGAAAAAGAATTTTGTGGCTCAATCATCTTCAGTCTAG 2136 0.4054 MLEGEPKENATSVVPISTETSILAVENVQGEKINLQDVGGNHQKRVCVQRSPDCVIPKTSKDQSSFFPRSKPFTSSRSLKPRTWLRTGNTQNTLYTRKGNSLVRKVIPVSATTSTSVANQSPSLGFDNFEKSIRSECMVNVPADPKNVRETNDAAKSYEELCKYSETYENQIGSDNRGAGQVEISSSTAKRIVYMKPKSNKLVASLDSSDLSVSTDGKTQTAYSNGYYKKRKNQIIRTSFVSHISPTVTMQDSNVNSDGPLDSKEICSRFTNKWSQKVAGSLCKPLKAPLGGTLSSKNNTGSGHYRKILPHFFQWKRSTFRRRFVHNRDLSSNFTPSSANSKKLLLLRKRDAVYTRSTHGFSHWKPKVLHTGGSIIKGSKFSGRYSEKVNEEALAVAVLERKTREQKDVACNSSQAKSLAAKEGSIQQRLVIGENVYFQIGKGNQLIRDPRKRTRILANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDDGKCPYIHDPSKVVVCTKFLNGLCSNGNCKLTHKVIPERMPDCSYFLQGLCTNRSCPYRHVNVNPKASICGEFLRGYCADGNECRKKHSYVCPTFEAMGNCEEGTKCKLHHPKKLSKEKKRKRSRDENVGRRRYFGSVPTDIKETGLMVAQRQWQQSHDKDGDVADYIGFEVEERVDQPYEQATPSNNDIWDLQLDNLDEPIRPVLTLKKNFVAQSSSV 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03003 711 Gene3D - 501 555 - -
Aip07g03003 711 ProSiteProfiles Zinc finger C3H1-type profile. 556 583 IPR000571 GO:0046872
Aip07g03003 711 SMART c3hfinal6 503 527 IPR000571 GO:0046872
Aip07g03003 711 SMART c3hfinal6 474 502 IPR000571 GO:0046872
Aip07g03003 711 SMART c3hfinal6 556 582 IPR000571 GO:0046872
Aip07g03003 711 SMART c3hfinal6 583 605 IPR000571 GO:0046872
Aip07g03003 711 SMART c3hfinal6 529 554 IPR000571 GO:0046872
Aip07g03003 711 ProSiteProfiles Zinc finger C3H1-type profile. 474 503 IPR000571 GO:0046872
Aip07g03003 711 MobiDBLite consensus disorder prediction 59 78 - -
Aip07g03003 711 MobiDBLite consensus disorder prediction 604 625 - -
Aip07g03003 711 PANTHER CCCH ZINGC FINGER 33 702 - -
Aip07g03003 711 ProSiteProfiles Zinc finger C3H1-type profile. 529 555 IPR000571 GO:0046872
Aip07g03003 711 Gene3D - 556 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03003 Aip-Chr7 116994209 116998794 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip07g03003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03003 - - ahf:114924304 1308.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03003 07 116994209 116998794 Aip07g03003 07 116994209 116998794 ECH