Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02988 ATGGGTTCACAGCTACATCTGCTGCATATTGTTCTTGTTCTTGTTTGGATTCTTTGTGGTGCAGCAGATGCAGTAACTCAACCAAACTCAAATTGCACAAAACGCTGTGGCTCCGTCGAAATTCCGTTCCCATTTGGCACCGACGAGAGCTGTTCCCTCGACACCTCCTTCCTCATCTCTTGCAACCACACTTCAACCCCATACTTGCCTCACAACAACGCAACCGTGCTGAGCATCTCGCTCGACGACGGCGAAATGCGCGTTTCAGCAGCAGTAGCTAGAGGCTGCTACGACGTCAACGGCACGCGAATCAACGAAACCATGTGCCTCAGTGTTAATGAAACAACTAGCGGGATCTGCACCGGCGCCGGTTGTTGCCAGAGCCCAATACCGGCGAATGGCCTATCGGATATTGGTATTGGATCTTATAGTAGTGGTGCTGACAGCTACAACGCCATTTTTTCCTCCATCAACTCCTGCGGCTATGCGTTTGTGGCGGAGGATGGAGCCTACAATTTCTCCTCCGCAGACCTTGTCAACTTCCGCCACCAAAGTTTTCCCGTTGTAGTGGATTGGGCTGTGGGGAAGCAGACTTGTGAAGAAGCTCAAAAGAACACTTCAAGCTATGCATGTAGGGCTGATAAAAATGAATGTTACAATTCAACCAAGGGAGTTGGTTATATTTGCAAATGCTCCACTGGTTTTGGGGGAAATCCTTATCTCGTTGGTGGTTGCCAAGACGTTGATGAATGCAAGAACAAGGAATGGAACGATTGCTATAGTCGAGCAATATGCAAGAACGTACCTGGTAACTATACCTGTTCGTGTCCAAAAGGATACCATGGAGATGGGAGAGAAAATGGAACAAAGTGCCGTCGTCAGTCCAGGACACAATTCATTTTAATCATGGCATTGGGCGTTAGTGTTGGTGTTATAGCACTACTTGTGACAAGCTTTTATGTGTATTGGAGAATGAAGGAAAAGAGGCTAAATAAACTTAAGGAACAATTTTTTCAACAAAATGGTGGCTTCATCCTACAACAAAAGATTTCAAGACATAGAGGGTCAAAAGAAACAGCTAAACTCTTCACCGTGGAAGAATTAAAGACAGCCACCAACAACTTTGACGAAAGCAAGATCTTAGGCAAAGGGGGTCAAGGAACAGTTTATAAAGGATTACTATCAGACAATAGAACCGTAGCAATTAAAAGATCCAAAATCAGTGGCTCAACCCAAATTGAACAATTCATCAATGAAGTTGTGTTGCTTTCCCAAATCAACCATAGAAACGTGGGGACACTAGGGTATCTTGACCCTGAATACATGCACACTAGCCAGTTAACTGAGAAAAGTGATGTGTATAGTTTTGGAGTCGTCTTAGCAGAGCTGCTCACGGCAAAGAAGGCGCTCTCTTTCGCCGTGTCGCCGGAGGTTAGAAACCTTGCCGTATACTTTGTTTCTTCAATGGATGAAGGCTGTTTACTTCAGATTGTGGACGAACACATTATAAATGAAGCAAACGTTGAGCATCTTATGGAATTTGCCAATGTTGCTAAACAGTGTTTGAGAGTTAAGAGGGAAGAAAGGCCTAGCATGAAAGAAGTTGCATTGCAACTTGAGGGGCTTAGAGGAGTAGTTGGAGAGAAACACCGATTGGAAGAAACTAAAAGCTCGTTGAAAGCATCATCGTCTTCAATCTTGGATGTTGAAAGTTCTAAGTTTATTGATAGCTTAAGTCAGGTTCCTATGTCACTGGCTGGTGGAAGATGA 1770 0.4446 MGSQLHLLHIVLVLVWILCGAADAVTQPNSNCTKRCGSVEIPFPFGTDESCSLDTSFLISCNHTSTPYLPHNNATVLSISLDDGEMRVSAAVARGCYDVNGTRINETMCLSVNETTSGICTGAGCCQSPIPANGLSDIGIGSYSSGADSYNAIFSSINSCGYAFVAEDGAYNFSSADLVNFRHQSFPVVVDWAVGKQTCEEAQKNTSSYACRADKNECYNSTKGVGYICKCSTGFGGNPYLVGGCQDVDECKNKEWNDCYSRAICKNVPGNYTCSCPKGYHGDGRENGTKCRRQSRTQFILIMALGVSVGVIALLVTSFYVYWRMKEKRLNKLKEQFFQQNGGFILQQKISRHRGSKETAKLFTVEELKTATNNFDESKILGKGGQGTVYKGLLSDNRTVAIKRSKISGSTQIEQFINEVVLLSQINHRNVGTLGYLDPEYMHTSQLTEKSDVYSFGVVLAELLTAKKALSFAVSPEVRNLAVYFVSSMDEGCLLQIVDEHIINEANVEHLMEFANVAKQCLRVKREERPSMKEVALQLEGLRGVVGEKHRLEETKSSLKASSSSILDVESSKFIDSLSQVPMSLAGGR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02988 589 ProSitePatterns Calcium-binding EGF-like domain signature. 247 274 IPR018097 GO:0005509
Aip07g02988 589 SUPERFAMILY Protein kinase-like (PK-like) 360 536 IPR011009 -
Aip07g02988 589 Pfam Wall-associated receptor kinase galacturonan-binding 32 89 IPR025287 GO:0030247
Aip07g02988 589 Gene3D Phosphorylase Kinase; domain 1 349 433 - -
Aip07g02988 589 SUPERFAMILY EGF/Laminin 246 285 - -
Aip07g02988 589 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 432 567 IPR045274 GO:0007166
Aip07g02988 589 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 107 431 IPR045274 GO:0007166
Aip07g02988 589 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 70 IPR045274 GO:0007166
Aip07g02988 589 SMART egf_5 198 246 IPR000742 -
Aip07g02988 589 SMART egf_5 250 292 IPR000742 -
Aip07g02988 589 Pfam EGF domain 257 285 IPR024731 -
Aip07g02988 589 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 265 276 IPR000152 -
Aip07g02988 589 ProSiteProfiles EGF-like domain profile. 247 286 IPR000742 -
Aip07g02988 589 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 19 70 - -
Aip07g02988 589 SMART egfca_6 247 292 IPR001881 GO:0005509
Aip07g02988 589 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 432 567 - -
Aip07g02988 589 CDD EGF_CA 247 283 - -
Aip07g02988 589 Gene3D Plasmodium vivax P25 domain 171 299 - -
Aip07g02988 589 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 107 431 - -
Aip07g02988 589 Pfam Protein tyrosine and serine/threonine kinase 436 538 IPR001245 GO:0004672|GO:0006468
Aip07g02988 589 Gene3D Transferase(Phosphotransferase) domain 1 434 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02988 Aip-Chr7 116704128 116708495 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02988 432 551 Receptor kinase-like Gene Family AT1G21250 50.833 2.44e-28 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Aip07g02988 PK_Tyr_Ser-Thr 1.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02988 - - aip:107607783 806.594