Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02956 ATGGAGGATTCTTCTAATAATAACAATACTTGTGACGACAGTAAGATTTGTCCCCGCGGTCACTGGCGACCCGCCGAGGATGAAAAGCTTCGCCAACTTGTTGAACAATATGGTGCTCAGAATTGGAATTCCATTGCTGAGAAACTTCAAGGAAGGTCAGGTATATATCGT 171 0.4386 MEDSSNNNNTCDDSKICPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGIYR 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02956 57 MobiDBLite consensus disorder prediction 1 21 - -
Aip07g02956 57 SUPERFAMILY Homeodomain-like 17 54 IPR009057 -
Aip07g02956 57 ProSiteProfiles Myb-like domain profile. 19 54 IPR001005 -
Aip07g02956 57 PANTHER MYB PROTEIN-RELATED 3 54 - -
Aip07g02956 57 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 57 IPR017930 -
Aip07g02956 57 CDD SANT 22 54 IPR001005 -
Aip07g02956 57 Pfam Myb-like DNA-binding domain 19 54 IPR001005 -
Aip07g02956 57 Gene3D - 19 55 - -
Aip07g02956 57 PANTHER OS08G0435700 PROTEIN 3 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02956 Aip-Chr7 115934075 115934245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02956 16 54 MYB Transcription Factor Family AT1G17950 76.923 3.80e-18 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip07g02956 Myb_DNA-binding 9.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02956 K09422 - mnt:21388854 95.5153