Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02878 ATGAACAGCTACTGCTACGACAACAACGACGTCGTTATGGAACAAAGCAATAGCATCCTATGCAAATACACAGTGCACCGCACTGTCACTAACAAATTCACCAAACACAACAAGAAATCCACCATGGAACCCAGAACGGTGCGTGTGTCTTACACCGATCCAGACGCCACTGACTCCTCCGCCGATGAAGCAGAACAACACTTCCTCTCTTCTTCTCGCAAGAGAGTAAAGCGTTACATCAACAGCATTCAAATCGAACCCGCTTCCACCAAGAACCCTGTCTCCGCCGCACACAATAAGAAAAGGGCTACTGCAAACGCTGGCGACGCTGCTGCTTCTTGCCGCCGGCCGGCCAAGGCTCCGGTGACCACCAACGGAGGGAAGAAGTTCCGCGGTGTAAGGCAAAGACCATGGGGGAAGTGGGCGGCGGAGATTAGAGATCCGGCGAGAAGAGTTCGTCTCTGGCTGGGAACCTACGACACGGCGGAAGAAGCTGCCATGGTTTATGACAATGCGGCCATTCAAATTCGTGGCCCTGACGCTCTCACAAACTTCATCACTCCACCGCAGCGCGGAGAACCACAGCCACAGCCACAACCACAAGAAGGAGAAACAACCACCGCCGTGAAACCAGAAATGAAGGTGGTTGTAACTGCAGAAGCTTCCGGCTCCGGCTCCGGCTACGACTCCGGTTCAGAAGATCACCGGTGTCTGAACCTCTCATCCCCAACCTCAGTTCTCCAATTCAGAAGCAGCGAAACGGAATCGTCAGAGCAAGCAAAGAAACAGTCGTTCGTCCATTGTAGTAGTGATGACGTGTCAGGTTCAGGTTCAGTTTCAATGGAAGAAGTATTCGGAGAGTGCCAAGGCGAAACGAGCTTGTTCGAGGAGACTGGTGAGTTCTTGGGTTTGGAAATGATGCCGGTTTGGGATGAGGTGTTCGATTTTCAAACGCCGCAGTACCCAGTGATGTTCGAGGAGGAAGAAGAGAAACGGTTATTTGGGGAAACAAAGACGACGTCGTTTTGGTGCGCAGAAGAGGATCAAGAAGTAAGCATGGAGAACTATAACAGTAGCATTGTGCTGGCTGATTCACTCATCGATTTCGAGAAGGCTTGTAATCCAACTCCAACTCCAACTCCATCTAGCTTTTGCCAAATGGACGATGATTACTTCCAAGATATTTTGTTGGCTTCTGATCCTCTCGTCCTTCTATAA 1218 0.5066 MNSYCYDNNDVVMEQSNSILCKYTVHRTVTNKFTKHNKKSTMEPRTVRVSYTDPDATDSSADEAEQHFLSSSRKRVKRYINSIQIEPASTKNPVSAAHNKKRATANAGDAAASCRRPAKAPVTTNGGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIQIRGPDALTNFITPPQRGEPQPQPQPQEGETTTAVKPEMKVVVTAEASGSGSGYDSGSEDHRCLNLSSPTSVLQFRSSETESSEQAKKQSFVHCSSDDVSGSGSVSMEEVFGECQGETSLFEETGEFLGLEMMPVWDEVFDFQTPQYPVMFEEEEEKRLFGETKTTSFWCAEEDQEVSMENYNSSIVLADSLIDFEKACNPTPTPTPSSFCQMDDDYFQDILLASDPLVLL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02878 405 Gene3D AP2/ERF domain 128 187 IPR036955 GO:0003700|GO:0006355
Aip07g02878 405 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700|GO:0006355
Aip07g02878 405 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Aip07g02878 405 MobiDBLite consensus disorder prediction 186 210 - -
Aip07g02878 405 SMART rav1_2 129 192 IPR001471 GO:0003700|GO:0006355
Aip07g02878 405 MobiDBLite consensus disorder prediction 248 268 - -
Aip07g02878 405 CDD AP2 128 185 IPR001471 GO:0003700|GO:0006355
Aip07g02878 405 ProSiteProfiles AP2/ERF domain profile. 129 186 IPR001471 GO:0003700|GO:0006355
Aip07g02878 405 SUPERFAMILY DNA-binding domain 129 185 IPR016177 GO:0003677
Aip07g02878 405 Pfam AP2 domain 129 178 IPR001471 GO:0003700|GO:0006355
Aip07g02878 405 MobiDBLite consensus disorder prediction 105 131 - -
Aip07g02878 405 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 19 398 - -
Aip07g02878 405 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02878 Aip-Chr7 114822284 114824421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02878 21 297 AP2-EREBP Transcription Factor Family AT4G27950 43.137 1.40e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip07g02878 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02878 - - adu:107460630 728.013