Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02845 ATGCCTCCTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGGAATCATGATGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGGAAAAATTCAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTATTGTAGCTATTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGCTTCCTTTTTCTGAGCTGCTGAACATGACTCAAGATTATGATTTTTTAGTTGATGTCATTGGCCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGTGCTTGAATTAAGTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGAGACTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTAGTGATGCAACTTGCTAAAGTCAAGTTCTTTAGGGGCCAAGTAGGTCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTAATCTTCCTGAAGTTGTTGAATTCAGGCAGAGTATGGTTGAGCAAGGTGTCAACGGTACCCAGCCACTCTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATGAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTCTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAGTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACTGAGGTTCAAAGAGATGCAAGTCTTGTATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTGCCACATGATACATTTTATGGCACTTTCCGAGTTAGGAGAATATGTGATGATCCCACGATTATTGCCATGTTTGAGCTTCCCGATTATGATGCTGATGATGAGTCAACCCCAAAAAAGGAGGCTGATTTACACAAATCTGTTCCATGTGGAAGTGGTGATATTGGTGTTAAGAAGGATTTATCAAAGAATTTTATTAAAAGTGAGGAAATTTCTGGTGAGTCTTCTGGGATTTTATCTAAATCCCCTGTTCTTATAGATTTTCTGGCTGAAAAACAGCCTACTGTTTTCGGAAGGACTGAGTTTGCTCCGTTAATTAATGGTGAACATGGAAAAGATGACAAAACACCCAGCAGTGACACTGTTAGTGATGATCTTTCTGCTAAAATAGATATATTGCTTAGCTCACCAGAAAAAGAAATTCAGGAGGTGTTGTCCCATGTTATTGATGCACCTTCCAAATATGGAGAGAAGCTTATTCATGAAAATGATGTTGTCACCTCCAAGGGCAAGAGGAATCTGAATCCCCAATTTGAAGAGGCCGCTGTTGATGGAGATGGGCGTGGGTTCAAGATTGCCAAGGTTAATGGAGTTTGA 1782 0.3889 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHDVPNSMEMILLDEHCGKIQATVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRTTIVAIDEDVIPKTCFNMLPFSELLNMTQDYDFLVDVIGLLTSVGEEKEYAKEGKIVKMIVLELSSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVMQLAKVKFFRGQVGLQNVMYATQMLFNPNLPEVVEFRQSMVEQGVNGTQPLFIANEGKVVSLEDDFMRLTRKCTIEELQDNNEVLLRMEVGGILLVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITVEDHSGEGIFLLFDREASYLLKKSCADLFTEVQRDASLVCGDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDPTIIAMFELPDYDADDESTPKKEADLHKSVPCGSGDIGVKKDLSKNFIKSEEISGESSGILSKSPVLIDFLAEKQPTVFGRTEFAPLINGEHGKDDKTPSSDTVSDDLSAKIDILLSSPEKEIQEVLSHVIDAPSKYGEKLIHENDVVTSKGKRNLNPQFEEAAVDGDGRGFKIAKVNGV 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02845 593 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Aip07g02845 593 CDD RPA1_DBD_C 298 408 IPR013955 -
Aip07g02845 593 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 360 - -
Aip07g02845 593 Gene3D - 119 242 IPR012340 -
Aip07g02845 593 CDD RPA1_DBD_A_like 19 107 - -
Aip07g02845 593 Gene3D - 4 112 IPR012340 -
Aip07g02845 593 CDD RPA1_DBD_B_like 140 242 - -
Aip07g02845 593 SUPERFAMILY Nucleic acid-binding proteins 298 412 IPR012340 -
Aip07g02845 593 PANTHER REPLICATION FACTOR A 1, RFA1 22 360 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip07g02845 593 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Aip07g02845 593 Pfam Domain of unknown function DUF223 43 134 IPR003871 -
Aip07g02845 593 Gene3D - 243 414 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02845 Aip-Chr7 114169291 114172176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02845 11 359 Core DNA Replication Machinery Family AT5G08020 21.429 1.66e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02845 - - adu:107471135 928.317