LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip07g02746	ATGTGTGGACCCAAAAGTGGCAGTGAGAAGCTTTCATGCACATTGTGGAAAAATTATGCATCTGAATTGGTCACTCTTCTTGATGCCAACAAGGCCACCGAATTTATAATCGTACTCCAATTTGCCAAGATGAAGTTCTACAATGGTGTGATGACTATCACCAACACAAACTACACCACAAGGCTCATGATTAATGCTGACCTTGAAGTGGTTAAGAAATTCCGCCAAAAGCTGATTGGACTTGGTACCAAGCATAGCACCAGCGTTGATGTTATAGGCCGGGTAGTGAGGCATTCTCCTTCTGAAAATTTTCTCAGCCATATACCCTACGCACCCATACATCAGATAAAGCAAACTGTTGAGAAATCAACCTACGTGACATGTGGAACGGTGATCGACATTGACAGAGATCATGCATGGTGGTACAAGGCTTGCAGGCAATGCACTCAGGGACTGGAGGCACTTACTGAGCAGTTTTATTGTGCAAAATGCGATGTTTACTCAACAATTTTTGTTGCAAGGTTTTGCATTCAGGTTTGTGTTGTTGATGACTCAGATACAGCAATCTTTGTTCTCTTTGAGAATTCTGCCTCAAAGTTCTTAGGACTAACTGCCGCTGACATCCGCACCAGCATGCTTGCTAAGATCTTTTGGATATGTTCTGATCCAGAAATTATAGCTTCACTTGCTTTAGAAAAGAACATTAAATTGGATGCATTGCAGAAGTTGACCACTGGAACGGGTGTTCGTAGTGGTGAATTGATTCGGAATGGGAGCATAGTCGGAGTTGCTGGTTCCACCACCCCTCCGAGCACCAAAGCCGCATCTGTTTCTAAGCTTGGCGCTGACCACGTGGTTACACAGACTCCTGTAAAACGACTGTGCATTAGATCCGACAATGACCTCTCCTCCCGTGCCTCACTCTCTTCCTCCAAGATTCTTCTTCCTGCGTTTGAGAAGTGCATCCCAGGGAATGCCACCGATCCTGTTGCAGAGGATATGTGA	1005	0.4488	MCGPKSGSEKLSCTLWKNYASELVTLLDANKATEFIIVLQFAKMKFYNGVMTITNTNYTTRLMINADLEVVKKFRQKLIGLGTKHSTSVDVIGRVVRHSPSENFLSHIPYAPIHQIKQTVEKSTYVTCGTVIDIDRDHAWWYKACRQCTQGLEALTEQFYCAKCDVYSTIFVARFCIQVCVVDDSDTAIFVLFENSASKFLGLTAADIRTSMLAKIFWICSDPEIIASLALEKNIKLDALQKLTTGTGVRSGELIRNGSIVGVAGSTTPPSTKAASVSKLGADHVVTQTPVKRLCIRSDNDLSSRASLSSSKILLPAFEKCIPGNATDPVAEDM	334

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip07g02746	334	PANTHER	ANIMAL RPA1 DOMAIN PROTEIN	8	207	-	-
	Aip07g02746	334	SUPERFAMILY	Nucleic acid-binding proteins	113	209	IPR012340	-
	Aip07g02746	334	Pfam	Replication factor-A C terminal domain	128	209	IPR013955	-
	Aip07g02746	334	PANTHER	REPLICATION FACTOR A 1, RFA1	8	207	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Aip07g02746	334	Gene3D	-	105	234	IPR012340	-
	Aip07g02746	334	CDD	RPA1_DBD_C	113	208	IPR013955	-
	Aip07g02746	334	Gene3D	-	5	86	IPR012340	-

Showing 1 to 7 of 7 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip07g02746	Aip-Chr7	112429162	112431183	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip07g02746	14	208	Core DNA Replication Machinery Family	AT5G08020	25.000	2.10e-07	50.4

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip07g02746	-		-	adu:107458794	474.167

Showing 1 to 1 of 1 entries