Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02715 ATGGCACAAGTTCAGGTGAGCCCCAATGCGAACGGTGATTCCGCCGCCGCCGCTGCTTTTGTCCCGAACCAGTCAGTGATGACGTCACTGTACGTTGGAGATCTCGACCGCAACGTCAAGGATCCGCAGCTCTACGATCTCTTCAACCAGATCGGTCAGGTCGTCTCCGCTCGCGTCTGCAGGGACTTGGCCACCCAGCAATCCCTGGGTTACGGTTACGTCAATTTCAGTAACCCTCAAGACGCGGCAAGAGCATTGGATGTGTTGAATTTCACTCCATTGAACAATAAACCGATTAGGATCATGTATTCTCATCGGGACCCTAGCTCCCGCACTAGCGGCGCTGCTAATATATTTATCAAGAATTTGGATAAGTCGATTGATCATAAGGCTCTGCATGATACTTTTTCCTCTTTTGGGACTATTCTTTCTTGCAAGATAGCCACAGATCCTTCTGGGCAGTCAAAAGGATTTGGCTTTGTGCAATTTGAGAAGGAAGAGTCTGCTCAAAATGCCATTGACAAGTTGAATGGAATGCTGATAAATGACAAACAGGTTTACGTGGGGCATTTTCAAAGAAAGCAGGATAGAGAGAGTGTCTTAAGCGCCAATACAAAATTTAGTAATGTGTATGTAAAGAACCTGTCAGAGTCCATGTCGGATGATAACTTGAAGAAAATTTTTGGGGAGTATGGGACAATTACTAGTGCTGTAGTGATGAGAGATTTAGATGGTAAATCGAAATGTTTTGGTTTTGTCAATTTTGAAAATGCTGATGATGCTGCTAAAGCTGTTGAGGCACTCAATGGAAAGAAATTTGATGATAAGGAGTGGTACGTTGGGAAAGCCCAGAAGAAATCCGAAAGGGAGCTTGCCCTGAAGGAGCGATTTGAGCAGAGTATGAAGGAAGCTGCTGACAAATATCAAGGTGCTAACTTGTATCTCAAGAACTTGGATGATAGCATCGATGATGTAAAGCTCAGGGAACTCTTCTCAGATTTTGGTACAATAACTTCATGCAAGGTTATGCGTGATCCACATGGAGTCAGTAGAGGGTCTGGGTTTGTTGCATTTTCATCTCCTGAGGAAGCTACTCGAGCTCTCGGAGAAATGAAAGGGAAATTGATTTCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAAGAAGAAAGAAGAGCCAAGTTGCAGGCCCAGTTTTCTCAAATGACGCATGTATCAATGGCTCCTTCTGTTGCACCTCATCTCCCGCTCTATCCTCCAAGGGCCATGGGTCTTGGACATCCATTTTTGTATGGGCAGGCACCTCCAGCTGTCCTTCCTCAAGCTGGATTTGGTTATCAGCAGCAACNNNNNGGACAGCGCCCAGGTGTCCGTCGAGGAACAGGTCCTGTGCAACAACCACAGCAGCCAGTGCCGATGATGCAGCAGCAGATGCTTCCAAGGGGACGTGGCCATCGTTATCCAGGTGGTCGCAACATGCAGGAGGTTCCAATGCTTGCAGTCAACTATGACATGGGAGCTCTGCCCATCCGGGATGCGATGGGACAACCAATGCCCATTCAGGCCTTGGCTACTGCCCTTGCAAATGCTCCTCCAGGACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCACTTGTTGATAAGCTGGAACATGATGCTGCAGCAAAGGTTACAGGCATGCTTTTGGAGATGGACCAGCCTGAAGTGTTGCATCTGATTGAGTCACCCGATGCTCTCAAGGCAAAAGTTGCCGAGGCCATGGACGTGTTGAAAAATGTTGCTCAGCAGCAAACCAATGCCCCAGCTGATCAACTCGCCTCCCTCTCTCTCAATGAGAATCTTGTGTCTTAG 1857 0.4733 MAQVQVSPNANGDSAAAAAFVPNQSVMTSLYVGDLDRNVKDPQLYDLFNQIGQVVSARVCRDLATQQSLGYGYVNFSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSSRTSGAANIFIKNLDKSIDHKALHDTFSSFGTILSCKIATDPSGQSKGFGFVQFEKEESAQNAIDKLNGMLINDKQVYVGHFQRKQDRESVLSANTKFSNVYVKNLSESMSDDNLKKIFGEYGTITSAVVMRDLDGKSKCFGFVNFENADDAAKAVEALNGKKFDDKEWYVGKAQKKSERELALKERFEQSMKEAADKYQGANLYLKNLDDSIDDVKLRELFSDFGTITSCKVMRDPHGVSRGSGFVAFSSPEEATRALGEMKGKLISGKPLYVALAQRKEERRAKLQAQFSQMTHVSMAPSVAPHLPLYPPRAMGLGHPFLYGQAPPAVLPQAGFGYQQQXXGQRPGVRRGTGPVQQPQQPVPMMQQQMLPRGRGHRYPGGRNMQEVPMLAVNYDMGALPIRDAMGQPMPIQALATALANAPPGQQRTMLGEALYPLVDKLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLKNVAQQQTNAPADQLASLSLNENLVS 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02715 618 Gene3D - 2 115 IPR012677 -
Aip07g02715 618 Gene3D - 309 411 IPR012677 -
Aip07g02715 618 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Aip07g02715 618 MobiDBLite consensus disorder prediction 448 470 - -
Aip07g02715 618 SUPERFAMILY PABC (PABP) domain 469 609 IPR036053 GO:0003723
Aip07g02715 618 CDD RRM4_I_PABPs 310 388 - -
Aip07g02715 618 Gene3D - 116 204 IPR012677 -
Aip07g02715 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Aip07g02715 618 PANTHER RNA BINDING PROTEIN 17 450 - -
Aip07g02715 618 PANTHER RNA BINDING PROTEIN 452 602 - -
Aip07g02715 618 SMART poly_2 532 595 IPR002004 GO:0003723
Aip07g02715 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Aip07g02715 618 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 520 597 IPR002004 GO:0003723
Aip07g02715 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Aip07g02715 618 CDD RRM3_I_PABPs 207 286 - -
Aip07g02715 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Aip07g02715 618 CDD RRM2_I_PABPs 114 190 IPR045305 -
Aip07g02715 618 SMART rrm1_1 117 189 IPR000504 GO:0003723
Aip07g02715 618 SMART rrm1_1 29 102 IPR000504 GO:0003723
Aip07g02715 618 SMART rrm1_1 312 384 IPR000504 GO:0003723
Aip07g02715 618 SMART rrm1_1 209 281 IPR000504 GO:0003723
Aip07g02715 618 Gene3D - 516 599 - -
Aip07g02715 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Aip07g02715 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Aip07g02715 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Aip07g02715 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Aip07g02715 618 SMART rrm2_1 209 281 IPR003954 GO:0003676
Aip07g02715 618 SMART rrm2_1 312 384 IPR003954 GO:0003676
Aip07g02715 618 SMART rrm2_1 117 189 IPR003954 GO:0003676
Aip07g02715 618 Gene3D - 205 308 IPR012677 -
Aip07g02715 618 CDD RRM1_I_PABPs 29 108 - -
Aip07g02715 618 PANTHER POLYADENYLATE-BINDING PROTEIN 17 450 - -
Aip07g02715 618 PANTHER POLYADENYLATE-BINDING PROTEIN 452 602 - -
Aip07g02715 618 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 29 593 IPR006515 GO:0003723
Aip07g02715 618 Pfam Poly-adenylate binding protein, unique domain 528 592 IPR002004 GO:0003723
Aip07g02715 618 SUPERFAMILY RNA-binding domain, RBD 28 197 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02715 Aip-Chr7 111845893 111849211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02715 24 617 Eukaryotic Initiation Factors Gene Family AT1G49760 63.422 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02715 K13126 - gmx:100784442 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02715 07 111845893 111849211 Aip07g02715 07 111845893 111849211 ECH