Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02707 ATGGACAACACCATTGACCAGTTGAAATCATCTTCCTCTTCGGAAGAGGATCAGATGGACTTGATGAACATGATGATGATGCAACTTCCTAACGAATTCTCTTCACCTAATTACGCTGATGAGACCAGCGTGCAAGGATTCCACCCATCACCACAGTTTCTTGGTGCACGCAGTGGCAGTACTATGCAACTATCAGATTCAATCGATAACAGAAATTCTATCATGCCCTGGTCTTCACCATCAACCACAATCTCTTTCTCTAACAACAACCCTACCTCAATGCTTCAAACAGAATTGCCATCTTTGTTGGGAAATTCAGGTGCAACGGAGAATAAGCGGAACTCAATGGCGGCGATGAGGGAGATGATATTCAGAATAGCGGCCATGCAGCCAATACACATAGACCCTGAGTCAGTAAAGCCACCAAAGAGGAGGAACGTGAAGATCTCGAAGGATCCACAGAGTGTGGCGGCGCGGCACAGGAGAGAAAGGATAAGCGAGAGAATAAGGATACTGCAGAGACTGGTCCCCGGAGGAACCAAGATGGACACTGCTTCAATGCTTGATGAGGCCATTCACTATGTCAAGTTTCTCAAGGCCCAGATTCACTCATTGGAACGTGCTTCTTCTTCTGCAAACAATAATAATAATAATAATGCAACTGCATCAGGTGCAGCTGCAGCTACTGCCACTCTCAATGCCCCTGGCGCCTCTTATCTTTCTCTACCTAAACCTTATCAAGGTCGAAATGCTCACCATTATGGAGATGCATGA 774 0.4599 MDNTIDQLKSSSSSEEDQMDLMNMMMMQLPNEFSSPNYADETSVQGFHPSPQFLGARSGSTMQLSDSIDNRNSIMPWSSPSTTISFSNNNPTSMLQTELPSLLGNSGATENKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKAQIHSLERASSSANNNNNNNATASGAAAATATLNAPGASYLSLPKPYQGRNAHHYGDA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02707 257 Pfam Helix-loop-helix DNA-binding domain 158 198 IPR011598 GO:0046983
Aip07g02707 257 SMART finulus 155 204 IPR011598 GO:0046983
Aip07g02707 257 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 5 248 IPR045843 GO:0003700|GO:0006355
Aip07g02707 257 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 5 248 - -
Aip07g02707 257 Coils Coil 195 215 - -
Aip07g02707 257 Gene3D - 148 222 IPR036638 GO:0046983
Aip07g02707 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Aip07g02707 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 208 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02707 Aip-Chr7 111344597 111345658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02707 75 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 66.013 6.80e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip07g02707 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02707 - - aip:107607656 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02707 07 111344597 111345658 Aip07g02707 07 111344597 111345658 ECH