LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip07g02649	ATGGCTATCCGCGTAACCTTCTCCTTCTCCGGCTATGTCGCCCACAACCTTGTCTCCACCGCCACCTCCCGCATATCCAATTCCCGCTGCCTCCAAGAATGCTGGATCCATTCTCGCCTCTTCGGAGTTAGCCCAAAACATGACCGAGATCCCACCGCCGGTGTCCGAAGCTTCCATTCCGATCATCTCCGGCGGCCGAAGCCACGCAATCCTTGCGCCTACACCACCCTCGCCGGAGAGATTTTCGGCGATAACTGCAGCAACCCGATCGTCTTGGGCTTGATCTCCATGATGAAGTCAACGGTCGGAGTTTCTGGTTCATCGTCGGCTTCCGTGGGTATTTTCGGTATTTCGCCCTTCAAGACCTCTTCCATCATACCTTTCTTGCAGGGTTCTAAGTGGCTTCCGTGTAACGAATCCGTCCCTAATCCCACCACCACAAGCTGGGAGGTCGATAAGGGCGGAACGCTGTGTTCGGAGGAGGTGGCCGCTAGCGCTGTCTCCGCCGTTGAAGCTGGGAAGAGCAGGTGGCTCTCGCGGGTGTTGAACGTGTGTTCCGAGGATGCGAAGGCCGCGTTCACCGCCGTCACCGTTAGCTTGCTCTTCAAGTCCTTCCTGGCTGAACCTAGGTCTATTCCCTCTTCCTCTATGTACCCAACCCTCGAAGTCGGTGATCGCATTATGGCCGAAAAGTTTTCTTTCTTCTTTAGAAAGCCTAACGTTTCAGATATAGTGATTTTTAAGGCACCTCCTGTTTTACAAGAATTTGGTTTCTCTTCCTCTGACGTGTTTATAAAAAGGGTTGTAGCTAAGGCTGGAGACACTGTTGAAGTTCGAGATGGTAAATTACTTGTGAATGGTGTTGCTGAAGAAGAGGAATTCATTTTAGAGCCTCTTGCTTATGAAATGGAATTAACGGTTGTGCCAGAAGGATATGTTTTTGTGTTGGGAGATAATCGTAATAACAGCTTTGACTCACATAACTGGGGTCCACTCCCTCTTGAGAGCATTGTTGGTAGATCCATGTTTAGGTACTGGCCTCCATCCAAAGTATCTGACATTGATGCACATCATAAACTCACATCTGTGTCATCGGTGTTCAACACTTCTCTGAGATGA	1119	0.5004	MAIRVTFSFSGYVAHNLVSTATSRISNSRCLQECWIHSRLFGVSPKHDRDPTAGVRSFHSDHLRRPKPRNPCAYTTLAGEIFGDNCSNPIVLGLISMMKSTVGVSGSSSASVGIFGISPFKTSSIIPFLQGSKWLPCNESVPNPTTTSWEVDKGGTLCSEEVAASAVSAVEAGKSRWLSRVLNVCSEDAKAAFTAVTVSLLFKSFLAEPRSIPSSSMYPTLEVGDRIMAEKFSFFFRKPNVSDIVIFKAPPVLQEFGFSSSDVFIKRVVAKAGDTVEVRDGKLLVNGVAEEEEFILEPLAYEMELTVVPEGYVFVLGDNRNNSFDSHNWGPLPLESIVGRSMFRYWPPSKVSDIDAHHKLTSVSSVFNTSLR	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip07g02649	372	TIGRFAM	sigpep_I_bact: signal peptidase I	192	347	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Aip07g02649	372	CDD	S26_SPase_I	208	340	IPR019533	GO:0004252\|GO:0006465
	Aip07g02649	372	Pfam	Signal peptidase, peptidase S26	189	346	IPR019533	GO:0004252\|GO:0006465
	Aip07g02649	372	Gene3D	Umud Fragment, subunit A	202	361	-	-
	Aip07g02649	372	PANTHER	THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED	1	357	-	-
	Aip07g02649	372	PANTHER	SIGNAL PEPTIDASE I	1	357	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Aip07g02649	372	SUPERFAMILY	LexA/Signal peptidase	204	352	IPR036286	-
	Aip07g02649	372	ProSitePatterns	Signal peptidases I signature 3.	313	326	IPR019758	GO:0004252\|GO:0016021
	Aip07g02649	372	ProSitePatterns	Signal peptidases I serine active site.	214	221	IPR019756	GO:0004252\|GO:0016021
	Aip07g02649	372	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	205	221	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Aip07g02649	372	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	264	276	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Aip07g02649	372	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	308	327	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip07g02649	Aip-Chr7	109941220	109943906	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip07g02649	217	347	MADS-box Gene Family	AT1G29960	33.083	6.44e-14	66.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip07g02649	K03100		-	gmx:100817525	501.13

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip07g02649	07	109941220	109943906	Aip07g02649	07	109941220	109943906	ECH