Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02647 ATGGCTTCATCTTTCAACTTGCTAAAGAATATTGAAGCTGCCAACGAAAGTCCAAACTACAAGATAAAGGTCACAGTCCTGAAGTTGTGGTCAATCTCACCAAAGGAACAGAAATTTCAAAAATCCATGCTTGAGATGGTGGTTATGGATGAAGTGGGTGATCGTATCCAATGCTCAATTAGAAGTCCTCAAAGAAGGTTATTTGAGGGTGATTTATCTGATGGGATGATTTATACCTTATCAAACTTTTTGCTTGCACTAAATGATCAAAAATACAAGCCCACAAGTCATTCTCACCGTATCTATTTCAAGAGAGAAACTCAGCTTAGGATGGTATCGGATGTGAACTTTCCGTCTAATGTTTTTCGTTTTGTACCCAATGATCTCATTCTTAACCATACTAATGCTCAATCTCATCTTATTGATGTTATGGGACTCTTTATTGCCAAAGGTGATATTATTGAGTTTTATAAGAATGGAAATAAGTCTATCTACATTGTCATTGAGCTTGATGATATGGAAATTATAATGTCTGGGGTTCCTCATGCGAATCAACTCACTCAAATTGCTGCAGATCCTGCATATAACCTGGAAGATGATCTTCTAAATCGATCTACTTATAAGCCTATACGCGAGCTTAAGGAGTTAATTGAGAATGGTTCTTATGTTACCATTGGAACTGTTCTTGCTATCGATTCAAAGAATGGTTGGTGGTACAAGGGATGCAAGCAATGTTTCCATTCTTTGAAGGAAAGTGATACATCATATCATTGTACTACCTGTGATACATTTCCATCTTCTCATACTCCTAGCGGCGGTGATTGTGCGACGGCAGTGGCGGCGGTGGAGCAAAGAATGCTTCTTCAGAGAGCACAACAGGTGAAGAAGAGTAGACATGGACCGAGGTCACGAAGCTCAGAGTATTGCGGCGTCACCTTCTATCGAATGATCGGACGATGTGAATCGCATATTTGGTACAATATGCTTGATCAAGGTCTTGTTAAGGAACTGGCATTTTCATTTTGGCTGAACTGTAACCCAGAGGAAGAGAATGGGGGCGAACTTGTTTTTGGAGGAATTTGTGCTGACAGCTGTTCAGCTATTGTAGACTCAGGGACTTCTTTGTTGGCAGGTCCAACGATTTTAATTGATGTGGTTAAATCTGAAACTTCTGCACTGGCTGCTGTTGCAATGCAAGCGCTAGGTCATATTGGACTGCGTGTTTCAATACCTCCACTTGATGATTCTAATTCAGGTTTTGCATCAGCTGCTTATGGAATTGATAGTGGAGTGAGCATAGCTGTTGTTGAAAAAGAAGATTTGGCACCTATCCTCCTGGTGAACATCTCAAAACTTCCTCTTCAACACCAGGAAATTATCCTTAGAATCATTGTTAAGGTAATTGGTGAATGCCACTCAAGCCAAATTGGAAAATTGTAA 1440 0.4 MASSFNLLKNIEAANESPNYKIKVTVLKLWSISPKEQKFQKSMLEMVVMDEVGDRIQCSIRSPQRRLFEGDLSDGMIYTLSNFLLALNDQKYKPTSHSHRIYFKRETQLRMVSDVNFPSNVFRFVPNDLILNHTNAQSHLIDVMGLFIAKGDIIEFYKNGNKSIYIVIELDDMEIIMSGVPHANQLTQIAADPAYNLEDDLLNRSTYKPIRELKELIENGSYVTIGTVLAIDSKNGWWYKGCKQCFHSLKESDTSYHCTTCDTFPSSHTPSGGDCATAVAAVEQRMLLQRAQQVKKSRHGPRSRSSEYCGVTFYRMIGRCESHIWYNMLDQGLVKELAFSFWLNCNPEEENGGELVFGGICADSCSAIVDSGTSLLAGPTILIDVVKSETSALAAVAMQALGHIGLRVSIPPLDDSNSGFASAAYGIDSGVSIAVVEKEDLAPILLVNISKLPLQHQEIILRIIVKVIGECHSSQIGKL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02647 479 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 367 378 IPR001969 GO:0004190|GO:0006508
Aip07g02647 479 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 322 360 - -
Aip07g02647 479 SUPERFAMILY Nucleic acid-binding proteins 208 264 IPR012340 -
Aip07g02647 479 Gene3D Acid Proteases 299 359 IPR021109 -
Aip07g02647 479 Gene3D - 8 115 IPR012340 -
Aip07g02647 479 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 359 392 IPR001461 GO:0004190|GO:0006508
Aip07g02647 479 CDD RPA1_DBD_A_like 21 107 - -
Aip07g02647 479 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Aip07g02647 479 SUPERFAMILY Acid proteases 322 394 IPR021109 -
Aip07g02647 479 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 359 392 - -
Aip07g02647 479 Pfam Eukaryotic aspartyl protease 311 360 IPR033121 -
Aip07g02647 479 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 322 360 IPR001461 GO:0004190|GO:0006508
Aip07g02647 479 Gene3D - 200 271 IPR012340 -
Aip07g02647 479 SUPERFAMILY Nucleic acid-binding proteins 17 115 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02647 Aip-Chr7 109829774 109836184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02647 285 325 AP2-EREBP Transcription Factor Family AT5G60120 65.854 7.83e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02647 K08245 - aip:110264975 288.5