Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02533 ATGTCAAACTCCATCACCAATCAAAACCAATTTGAGGGGCAAGAGTTAGATGCTGCTTATGGTTCTTGTTTGAGAAACAACCCTGCATTCACTACTGAGTCCATAGGAGGAGTGTATCCCATTATGGAACCTCACCATCATGCACTAGCTTCAGGCTCTGAGATGAGTCACACAAGGCATTTGATGGATCTTCTTGGAGCAGCTGCTAATGAGAGCAATCATCATCATCATAATCATCACCAACGACAACCTCAAGGGCTCTCTCTTTCCTTAGGGTCTCACATGATTGTTCCTTCTCATGATGAATACAGTAGGCATAATAGTAGATCCTTCATTCATGGTTTCATGAACCCCAATAATTACTTCATCCCTGCCCAAGATTCAAGGGCAGTGGAGAATAATCTAACCAGTGACTACTACTTCAACAGTGCCACCACCACCACTACTTTTGCTTCATCTTCTGCCTCTTTTGGAAGTGAATCTTTTGCTGCTCTCATTGGGAACTCTAGGTACCTCAAACCAGTACAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAAACGTGGTTGATAGAATCAATGACAAGTATGTGGAGAAGTTGTTCCATGGTGGCAGGAACAGTTCCCGAACACTCTCCTCACAGTTCAGGAACAACATAAACACTGGTGTCTTGTCAGCTGAAAAACAAGAAAATCAAATCAAGATTGCAAAGTTGATTTCTTTGTTGGACGAGGTAGAAGGGAGGTATGAGAAATACTACCATCAAATGGAACAAGTGGTGGCATCGTTTGAGATGATAGCAGGTGAAGGAGCAGCAAAATGTTACACTGCATTGGCACTACAAGCCATGGCTAGGCACTTCTGCAACCTCAGAGATGCAATAATGTCACAGATAAATTTGGAGAAAAAGAAACTGTTGCAAGATTTGCCTAAACAACTCAACAATGGGTTATCTCAACTAAGCCTATTTGATAGAGACACAAGTAGACAAAGCAGAATGTCTTCTCTCCAACAACTTGGGATGATCCAAAGTCAACGCAGCCAACAAGTTTGGAGACCCATCAGAGGCTTACCTGAAACCTCTGTTGCAATTCTACGTTCTTGGCTCTTTGAGCACTTTCTCCACCCTTATCCTAATGATTCTGAGAAATTAATGTTAGCGTCCCAGACAGGTTTAACTAAAAACCAAGTGTCGAATTGGTTCATAAATGCAAGGGTACGGCTATGGAAACCAATGATAGAAGAAATGTACGAACAAGAGTTTGGAGACTCTTCAGAAGACTCCAACCCACAACCTGATTTCACCACCGATGATGCTACTCACTGCCACCACCACGATTCAAATTAA 1350 0.4244 MSNSITNQNQFEGQELDAAYGSCLRNNPAFTTESIGGVYPIMEPHHHALASGSEMSHTRHLMDLLGAAANESNHHHHNHHQRQPQGLSLSLGSHMIVPSHDEYSRHNSRSFIHGFMNPNNYFIPAQDSRAVENNLTSDYYFNSATTTTTFASSSASFGSESFAALIGNSRYLKPVQSLLEDLVDVGGNVVDRINDKYVEKLFHGGRNSSRTLSSQFRNNINTGVLSAEKQENQIKIAKLISLLDEVEGRYEKYYHQMEQVVASFEMIAGEGAAKCYTALALQAMARHFCNLRDAIMSQINLEKKKLLQDLPKQLNNGLSQLSLFDRDTSRQSRMSSLQQLGMIQSQRSQQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYEQEFGDSSEDSNPQPDFTTDDATHCHHHDSN 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02533 449 ProSiteProfiles 'Homeobox' domain profile. 371 412 IPR001356 GO:0003677
Aip07g02533 449 SMART HOX_1 352 416 IPR001356 GO:0003677
Aip07g02533 449 Pfam Associated with HOX 166 296 IPR006563 -
Aip07g02533 449 Pfam Homeobox KN domain 369 408 IPR008422 GO:0003677|GO:0006355
Aip07g02533 449 SUPERFAMILY Homeodomain-like 358 421 IPR009057 -
Aip07g02533 449 Gene3D - 346 427 - -
Aip07g02533 449 MobiDBLite consensus disorder prediction 421 449 - -
Aip07g02533 449 CDD homeodomain 352 413 IPR001356 GO:0003677
Aip07g02533 449 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 46 430 - -
Aip07g02533 449 SMART prehox3 160 297 IPR006563 -
Aip07g02533 449 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 46 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02533 Aip-Chr7 105349108 105351217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02533 162 431 Homeobox Transcription Factor Family AT2G16400 49.632 3.88e-79 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Aip07g02533 POX 2.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02533 - - gmx:100807944 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02533 07 105349108 105351217 Aip07g02533 07 105349108 105351217 ECH