Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02480 ATGGCTCGAGGGAAGATCCAGATCAAGAGGATAGAGAACACTACCAACAGGCAAGTCACATACTCCAAACGACGCAATGGACTTTTCAAGAAGGCCAATGAACTCACCGTTCTCTGCGATGCTAAGGTTTCTATAATCATGTTCTCTAGCACTGGCAAACTCCATGAGTACATTAGCCCCTCCATCGCAACTAAGCAGTTCTTCGATCAGTATCAGATGACCGTAGGAATTGATCTCTGGAACTCCCACTATGAGCATATGCAAGAAAACTTGAGGAAGCTGAAAGATGTAAACAGGAATCTTCGCCAGGAGATTAGGCAGAGGATGGGAGATTGTCTGAACGATCTGGGCATAGAAGAGCTTAAACTCCTTGAGGAAGAAATGGACAAGGCCTCTAAGGTTATTCGTGAGCGTAAGTACAAGATGATCACAAATCAGATTGACCAGCACAGGAAGAAGTTTAACAACGAGAAAGAAGTGCACAACAGACTCCTGCGTGATTTAGATGCAAGAGCAGAAGATCCACGTTATGGATTGGTGGATAATGGAGAGTATGAATCTGTCATAGGATTCTCAAATTTAGGTCCTCGTATGTTTGCATTGAGCCTACAACCTAGCCATCCTAATGCACATAGCGGAGGAACAGCAGCCTCTGATCTTACCACTTACCCTTTACTTTTCTAG 684 0.4415 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSIATKQFFDQYQMTVGIDLWNSHYEHMQENLRKLKDVNRNLRQEIRQRMGDCLNDLGIEELKLLEEEMDKASKVIRERKYKMITNQIDQHRKKFNNEKEVHNRLLRDLDARAEDPRYGLVDNGEYESVIGFSNLGPRMFALSLQPSHPNAHSGGTAASDLTTYPLLF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02480 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip07g02480 227 PANTHER APETALA3 1 224 - -
Aip07g02480 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Aip07g02480 227 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Aip07g02480 227 Coils Coil 151 171 - -
Aip07g02480 227 Coils Coil 84 107 - -
Aip07g02480 227 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Aip07g02480 227 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Aip07g02480 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip07g02480 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip07g02480 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip07g02480 227 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip07g02480 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip07g02480 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip07g02480 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip07g02480 227 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02480 Aip-Chr7 103828071 103832741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02480 1 226 MADS-box Gene Family AT3G54340 56.710 1.27e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip07g02480 K-box 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02480 K09264 - gmx:547720 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02480 07 103828071 103832741 Aip07g02480 07 103828071 103832741 ECH
Aip05g00872 05 11894595 11896433 Aip07g02480 07 103828071 103832741 ECH